Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g01458 ATGGACTCGAGCAGGTCTGAGGGAAAGAGGGTGTTGAGGAACGACGAGGAAGAGGAAGATGAGGAAGAAGAAGAAGAAGAGGAAGAGGTTGAAACGGATTTTGGAGAAGATGGAAGGAGGAATAAGAGAGTAATGAGAGATCTGTATGGAAAGAAAGGGTGGAAAGGTGGAGGCTCAATGCCACCTTCTTGTCAGGTGGATAACTGTGATGCTGATCTAAGTGAAGCTAAGCAGTATCACAGAAGACACAAGGTTTGTGAGTACCATGCCAAGGCTCATTCCGTACACATGGCAGGGCTGCAACAAAGGTTTTGCCAACAATGTAGCAGATTCCATGAGCTTTCTGAATTTGATGAATCAAAAAGGAGTTGTAGAGCACGGTTGGTTGGTCATAATGAGAGGCGTCGGAAAAATGCTGTTGACTATCGTGGAGAATAA 438 0.4521 MDSSRSEGKRVLRNDEEEEDEEEEEEEEEVETDFGEDGRRNKRVMRDLYGKKGWKGGGSMPPSCQVDNCDADLSEAKQYHRRHKVCEYHAKAHSVHMAGLQQRFCQQCSRFHELSEFDESKRSCRARLVGHNERRRKNAVDYRGE 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g01458 145 Gene3D - 55 125 IPR036893 GO:0003677|GO:0005634
Viun3g01458 145 Coils Coil 9 33 - -
Viun3g01458 145 PIRSF SBP 5 145 IPR017238 GO:0003677|GO:0003700|GO:0009908
Viun3g01458 145 MobiDBLite consensus disorder prediction 1 42 - -
Viun3g01458 145 MobiDBLite consensus disorder prediction 16 33 - -
Viun3g01458 145 MobiDBLite consensus disorder prediction 1 15 - -
Viun3g01458 145 FunFam Squamosa promoter-binding-like protein 14 55 125 - -
Viun3g01458 145 SUPERFAMILY SBT domain 62 142 IPR036893 GO:0003677|GO:0005634
Viun3g01458 145 ProSiteProfiles Zinc finger SBP-type profile. 61 138 IPR004333 GO:0003677
Viun3g01458 145 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 37 139 IPR044817 GO:0003677
Viun3g01458 145 Pfam SBP domain 64 137 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g01458 Viun-Chr3 9501894 9503808 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g01458 64 141 SBP-box Gene Family AT2G33810 73.077 9.40e-40 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Viun3g01458 SBP 4.6e-33 No_clan