Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g01456 ATGTCTGCAGCTGAGCGTCGTCCTCGAAACGGCCACGAGCAACCCCGTGAAGACGTGCAACACGCAGAAGGAGTTGGTATATGGAATTTTCCTCTGAATATCTGTGTTTTGGATTTTCAATCAGATTCTTCGATGGGAGACGAAGACGAGGACGAGAGCGAGGACGAATATATAACTATAGATTTGTCAGATTTCAAGGAATTGAAGTGTGCTATCTGCCTGGGAATCATCCGAAATACGAGAACAGTGACGGAATGCCTTCATCGATTCTGCAAAGAATGCATCGAAAAATCCATGCGCCTAGGTATCAATGAATGCCCTATTTGCCGTGTGCATGTTCCTAGTCGACGCTCATTGAGAGAAGATCCAAATTTTGATAAATTAATTGCTGCTCTTGTGCCAGATATTGATAAATACGAGGAACAGGAGGCATTGGGTTTTGTTGAGGATCATGATAAAGAGATGGAGGCTTCAAGTGTGGAGAATGTTCCATGTGAAACAGAAGCATCGGATAGAACAGAGAAGGCAAGGGCAATAGCTGTAGCTTTTGACAGGATGAGGAAGTCTAAAGGTAAAGATGTGAAGAGGGATCGCAGAAAGCTGAAAAATAATGCAGGTGATCAAGTTCAGGTATCCATTGAAAATGAGGCTTTGAATGATAGTGATGAGAAGACAGAAAACGGGACAAGAAAAGATGAAGGAGAAACACAAATTCCACAGGAATCTGCTACAATCGATGTGGATAGAGAAATAACTTCATCTGCAAATCTTCACCAGAGCAACACCCTACTCAGTCACCAGGAAAGGACAAAACAAGAAATAAGTAAAAATATGAGCAGTTTAGAAATATTAACCAATGATTATGCTCATATTGAGGAGGAGAATGATGATGTTGGAGGTGTACAATCTGTGGGATTAGGAAGTGTTCATAACGTTACGTTTCAATCCACTACAAAATTAAGTGAGAGTTTCTCAAATTTTGATTCAGCTGCCAACCCTAAACTGAAGGAAGAAGTAAGTAGTTTAAAGGAGAAGCTAGCTATAGTTGAAGAAAATTTCAAAACACTAAAAAGTGTTATGCTTGGGTACATAAAAATGAAAGAAGGACATATTCCTTCAGAATTGATTACTCTATTTGGTGATACTACTAATGCAGCTGATAAAAGAAGTGGATAA 1176 0.3971 MSAAERRPRNGHEQPREDVQHAEGVGIWNFPLNICVLDFQSDSSMGDEDEDESEDEYITIDLSDFKELKCAICLGIIRNTRTVTECLHRFCKECIEKSMRLGINECPICRVHVPSRRSLREDPNFDKLIAALVPDIDKYEEQEALGFVEDHDKEMEASSVENVPCETEASDRTEKARAIAVAFDRMRKSKGKDVKRDRRKLKNNAGDQVQVSIENEALNDSDEKTENGTRKDEGETQIPQESATIDVDREITSSANLHQSNTLLSHQERTKQEISKNMSSLEILTNDYAHIEEENDDVGGVQSVGLGSVHNVTFQSTTKLSESFSNFDSAANPKLKEEVSSLKEKLAIVEENFKTLKSVMLGYIKMKEGHIPSELITLFGDTTNAADKRSG 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g01456 391 ProSitePatterns Zinc finger RING-type signature. 86 95 IPR017907 -
Viun3g01456 391 Coils Coil 332 352 - -
Viun3g01456 391 Pfam Zinc finger, C3HC4 type (RING finger) 69 109 - -
Viun3g01456 391 CDD RING-HC_RING1-like 67 132 - -
Viun3g01456 391 ProSiteProfiles Zinc finger RING-type profile. 70 110 IPR001841 -
Viun3g01456 391 SMART ring_2 70 109 IPR001841 -
Viun3g01456 391 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 60 158 IPR013083 -
Viun3g01456 391 SUPERFAMILY RING/U-box 56 122 - -
Viun3g01456 391 PANTHER OS11G0578200 PROTEIN 43 276 IPR044592 -
Viun3g01456 391 MobiDBLite consensus disorder prediction 217 237 - -
Viun3g01456 391 MobiDBLite consensus disorder prediction 190 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g01456 Viun-Chr3 9477988 9481796 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g01456 68 113 C3H Transcription Factor Family AT3G23060 40.426 4.74e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g01456 K10695 - zju:107425269 174.481