Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g01455 ATGCCAGCACAGAACCCCCAACATGAGCAACCCCAAGATGAAGTGCAACACACTGCTCAAGCTGAGCAAAACGGTTCCTTGAGCAACCAGGACAAAGACGAGGCGGAGCACGTGGTTATAGATATGTCAATTTTGCAGTGTGCTATCTGCCGAGGAGTCATTCAGAAAACAATAACGCTGATGGAATGCTTTCATAAGTTTTGCAAAGAATGCATTGAGAAATCCATGAGCCATGGTGTCAATGAATGTCCTGTTTGTCATGTTCATGTTGCTGGTCAAATGTCACTGAAAGAAGACCCACAATACGATGCTTTAGTTTCTGCTATAGTGCACAAGAAAAAGGATCAGGAAGTGGCTTTGCATCTGCATGAGAGGACTAATGCTCAAGAGGCAAATTTTCAACAGAGTAACACCAGTATTAGTCGCGAGCAGGCTAGGAGAAATCGCCTCGCCAAGCTTGTTGATCTTCTACGTAATTCTGAATTGAACGCTGAGGAGTTGGATACTCACCTTGTGCTTGTCTCTTTGGATGAGCAAAAGATACCAAGTTTGGAGGAACCACATCTTTTATGCAGGCCTACTTGCTCAGTGAAGACACTCTGCAAGCATGTTGCACTCAAAAGTGAGCTGCTGGAGAATCAAGTTGAATTATTGTTGGTTGAAGAATCAGCAGGCAATAGTTTAAGTGGTAACATCTTGATTGAAGAATCAGGAGGCAATATTGTAATTAGTGACATAAAAGTTGACCCAAACAAGCACAAATTGCGTGTTCTGCGAGGTGAAGAAACTTTGGGTCAACTCTACACTCCCAATCTCACCAACTGTGGTCATCTGTTCATCGCTTATAAGCTGAAGTAG 858 0.4324 MPAQNPQHEQPQDEVQHTAQAEQNGSLSNQDKDEAEHVVIDMSILQCAICRGVIQKTITLMECFHKFCKECIEKSMSHGVNECPVCHVHVAGQMSLKEDPQYDALVSAIVHKKKDQEVALHLHERTNAQEANFQQSNTSISREQARRNRLAKLVDLLRNSELNAEELDTHLVLVSLDEQKIPSLEEPHLLCRPTCSVKTLCKHVALKSELLENQVELLLVEESAGNSLSGNILIEESGGNIVISDIKVDPNKHKLRVLRGEETLGQLYTPNLTNCGHLFIAYKLK 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g01455 285 PANTHER OS11G0578200 PROTEIN 7 145 IPR044592 -
Viun3g01455 285 SMART ring_2 47 86 IPR001841 -
Viun3g01455 285 MobiDBLite consensus disorder prediction 1 31 - -
Viun3g01455 285 ProSitePatterns Zinc finger RING-type signature. 63 72 IPR017907 -
Viun3g01455 285 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 117 IPR013083 -
Viun3g01455 285 Pfam Zinc finger, C3HC4 type (RING finger) 46 86 - -
Viun3g01455 285 SUPERFAMILY RING/U-box 46 95 - -
Viun3g01455 285 MobiDBLite consensus disorder prediction 1 28 - -
Viun3g01455 285 ProSiteProfiles Zinc finger RING-type profile. 47 87 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g01455 Viun-Chr3 9468765 9475370 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g01455 45 91 C3H Transcription Factor Family AT3G23060 41.667 2.50e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g01455 K10695 - dcr:108209673 122.864