Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g01428 ATGGAGGGAGAGGCTTGTTCCGAGGGAGAGGATAATCGGAGAAGGGGTGGCACAGACGATGATAGCAATGAGAATAACAACAACAAGATTGTGAATTCTAATGAGGGGCAGAGCAAGCCCAAGCGCCAGATGAAAACCCCTTTTCAACTTGAAACCCTCGAGAAGGCTTATGCTGTGGATAATTATCCGTCGGAGACGATGAGGGGAGAACTTTCTGAGAAATTAGGTTTGTCGGATCGGCAGCTACAGATGTGGTTCTGCCATAGGAGGTTGAAGGACAAGAAGGACTTGACGTCCAAGAAACTGCCACGGAAGATGGTGGCAGAGCCTTTGCCGGAATCACCTACAGATGACCCCATGCTGGGCCCCTCGGAGCTTGGTAATGAGTATGGATCCGGGTCCGGTTCAGGTTCCAGCCCTTATGCCCGAGTGGAGCCCCTGAACATTGTTCCTCGGGGTGTGCCTGGTTATTACGAGTCCCCACGGGCTATGATGGAGAATAGAGCAATTGCTTGTGTTGAGGCGCAGTTAGGAGAGCCGTTGAGGGAAGATGGACCAATTCTAGGAGTAGAGTTTGATCCATTGCCTCCAGATGCCTTTGGAGCACCTTTAGCAACAGAACAGCAGAAGCTACCCAATTTTGCCTATGACAGTAAAATATATGAAAGACATGATAGTAGAGCCAATAAGGCTATGGCAAGGACATTCCGTGACTATCGATCTCTACCGAGCCAGTCTGGCCCTAGGTCTGATACTCCTGGACCGTTCAGCAAATCTCATTTACATGATGCAATGGAAGGTCCTGCCAGAAATCCTCATTTGGCTCTTGGAAATGAAACTGTACCTAGAATTCGTCCTAGTCAAGGTCAATTTCGTGCTCGTCTTTTGTCTCAACAAGATAAGCAATTGATTCCGTATCAGTCTCCTACGCGGGGTGATAATACCGCCCCAATTAGGGAATTTGACCCATCCATACTTAATGTTGGAACGAGCTCTCACTTTGCTGATCACCAAACTGTTGTGCCAGAAAATCACCATGCTCAACCTAGTGGTCAAGTTTTGCATAACAACAATGCAACACGGATTGAGAAGAAACGAAAGGGTGATGATGTTCGTGATGTAGAAGCGCATGAGATGAAAATCCGGAAAGAGATTGAGAAGCAAGATAACCTTAGACGAAAGAATGAAGAGAGGATGAGAAAAGAAATAGAGAAACAAGATCGTGAAAGAAAGAAGGAAGAAGAGAGGTTAATGCGTGAGAGACAACGAGAAGAGGAAAGAGCAAAACGGGAGCAAAAACGCGAAATTGAGCGGAGGGAAAAATTTTTGCTGAAAGAAAATTTAAAAGCAGAAAAAATGAAGATAAGAGAAGAGCTTCGCAAAGAGAAAGAAGCAGAGAGAAGGAAAGCTGCCCTTGAGAAGGCGACTGCCCGTAGAATAGCTAAGGAATCTATGGAACTTATTGAGGATGAACAGCTGGAAATGATGGAGTTGGCTGCCACAAGCAAGGGGTTTTCCTCTATTATTCATCTTGATTTTGATACTCTGCAACATATTGAGTCATTTAGGGATTCATTGTGTGTTTTCCCACCAAAGAGTGTCAAGCTAAGAAAGCCATTTGCAATCAAACCCTGGATCAACTCAGAGAAGAATGTTGGCAATCTTCTCATGGTTTGGAGATTTTTGATTACTTTTGCTGATGTTCTGGAGTTATGGTCTTTTACTCTAGATGAGTTTGTTCAAGCATTTCATGACTATGATTCAAGATTATTGGGTGAGATACATGTTGCTCTTCTTAAGGTGGTAATAAAAGACATTGAAGATGTTGCAAGGACACCTTCTACAGGATTAGGATCGAACCAAAATGGTGCTGCTAACTCTGGAGGTGGTCATCCAGAGATTGTGGAAGGCGCATATGCATGGGGCTTTGACATAAGGAATTGGCATAAGCACTTGAATCTATTGACATGGCCAGAAATTTTCCGACAGCTAGCTTTATCTGCAGGATATGGACCACAGTTAAAGAAAAGAAGTGCTACCTGTTCATATGCAAATAATAAAGACGAGGGAAGAAGTTGTGAAGATATCATTTCTAAACTTCGTAACGGTTCAGCAGCTGAAAATGCAGTCGCAAAAATGCAGGAGAGAGGTCTGTTAGCCCCTCGAAGATCTAGACATCGATTAACTCCTGGTACAGTTAAATTTGCAGCATTTCATGTTCTATCCCTTGAGGGTGACAAGGGATTGACAGTACTAGAGCTTGCAGAAAAAATTCAGAAATCTGGTCTTCGAGATCTGACGACCAGCAAGACACCTGAGGCATCAATTTCTGTTGCTTTAACAAGAGATACCAAGCTTTTTGAAAGAATAGCTCCATCAACATATTGTGTACGTCAGGCATTTAGAAAGAACCCTGCTGATGCCGAGTCCATTCTTTCAGAAGCAAGAAAGAAAATTCAGATATTTGAAAATGGGTTTCTAGCTGAGGAGGATACAGATGATGTTGAAAGAGAAGAGTCAGAGAGTGACGAAATTGATGAGGACCCTGAAGTTGATGATTTGGTTAATTCTTCAAGTGCAAACAAAACATCTGAACCGTGTGATGATTTCTCATCAAATGGAAAAGAAAATTTGGGCCATGATGTTGGACTTCAGGGTGAGTTTGATAAGGATCTGCCTCGTTTTCCTGAGAGTTCTTCCAAGAAGGTTGATACTCCAATTGCTGTAACCGGGAAACCTGGTGCTTGTGAAGATTTGAACGTTGGAAATCTTGGTGAAGATAATATGGAAATTGATGAAAGCAAGCCCGGAGAGTCATGGGTTCAAGGGCTTGCAGAAGGAGAGTATTCTGACCTCAGTGTAGAGGAGCGTCTAAATGCTCTTGTTGTGTTGGTTGGTGTGGCAAATGAAGGAAATTCAATCCGTGTTGTTCTTGAGGATCGTTTGGAAGCAGCAAATGCTCTGAAGAAACAAATGTGGGCAGAAGCACAACTGGATAAATTTCGATTAAAAGATGATATTTTCAGTAAATCTGATTTTCCATCTCTTAATGGGAATAAAGTTGAAGTACAATATTCTTGTCCCGCCATGGAGGGAAACCAAAGCCCTTCGTTGCTTGGCATTAATATTGGCAACAATAGTAATAATGTGCCCTCTCCCAGCACTGCAGAAAATCAAAAAGCAGCTCTAGGTGTACAGAGCCTGTCTGTTGAAAAACACTCTTCCGTTCAAGATCTGTGCACTGGTGGCCCAGATAACCCTCAGATTCAGACATTTGCTCAGTATTCAAAAAGGTCACGGTCTCAGCTGAAATCTTATATTTTCCACATAGCAGAGGAGATGTGTGCCTACAGATCCTTACCCCTTGGGCAAGATCGAAGACGTAACCGTTATTGGCAATTTGTTGCATCTGCTTCTTCCAATGATCCTGGCTCTGGCAGGATCTTTGTTGAATTTCTTGATGGCAATTGGAGGCTGATTGATACTGAAGAGGCCTTTGATGCGCTTCTGAATTCCCTTGATTCGCGTGGGGTCAGGGAATCTCATTTGCGACTAATGTTGCAAAAGGTTGAGGGTTCCTTTAAGGAAAATGTCCGTAATAATACTCAATGTTCTAAAGCTGGAAGCAGAGGCGAAACATGTGTTAAAAATGAAGCTGACGAAACAGATTCCAGTCCTGATCGCCATACTGGATCTGACAGTCCCAGTAGCACCCTTTGTGGCTTGAACTCTGACAGTTTGGAAACTTCCTCATCCTTCAAAATTGAGCTTGGGAAAAGTGAGAGCGACAAGAAATCTGCATTGAGAAGGTATCAAGATTTTCAAAAGTGGACATGGAAAGAATGCTATAACTCATCAAAATTATGCGCCATGAAATATGGGAAGAAAAGATGCAAACCTCAGGTTGTCGTCTGTGATATCTGTCTCAATCCTTATTTCTTTGAAGACTCCCATTGCAGTTGTTGCCACCGAACTTTTCCCTCAAATAATGGATTTAATTTTTCTAAACACGCATTTCAATGCGGAGACAAATTATCAAAAGAGATTTGTATTTTGGATTCGTCTCTTCCCTTACGGACAAGATTGCTTAAGGCCCTGCTAGCTTATATTGAGGTTTCTATTCCACCTGAAGCTTTTCAATCAAATTGGATCGAAGATATTAGGAGGCATTGGAGTGTGAAGTTGAGCAAATCATCTTCTGTAGAGGAATTGCTACAGATATTGGCCCTACTTGAGAGAGCATTGAAGCGGGACTTTCTATCATCAACCTTCTCTACGACAGGGGAACAGTTGGGGTTGAACACTATGTCAGAGAGTGCTGCACAAACCTCTGCTGATCCTGAATCAGTTGCTGTACTTCCATGGGTTCCACTGACCACTTCAGCCGTGTCTCTCAGGCTTTTTGAGTTTGATGAATCAATTGTCTACGTACTGCATGAGAAACCTGAACCTCGTGAGGAGAAAGAAGATAGGCAGTACATAAAGCTTCCTTCAAGACACAATGCTTCCAAATCTATTAAAGTGGCTGAAACAGTAGACATGGGCCATGATGAATTCATGAAAGTTAAATCTCGTACTGTGAAAATTGTGCAAAGCAACAACAAACGAGGACGAGGTAGTGCTCTCAAAGGACGGAGTAAAAGTATATCTAAAACCAAGCAAAATAACGGCCGTCGGCACAGTGCAAAGGTTGCCGGGAATCTAAATCAAAGGGTAAAACAACAGGGAGGGGGATCACAAGGACGTGGTCGTCGAACAGTCCGGAAAAGAAGAGTGGGGAAAAAGGCTGTTGAAGATCTGTTGCTAGACCATAGGGGTGCCTCTCGTAGCAACAACATTGCTAGAGAATCATTAAGAAACTTGGATGAGGATTGGGATGATGAAAAAGCAAGTCCTATGACCCCCATCCATATGGGGACTGCTAACGTTAGTAACAGCACTGAAGAGGCTGAATCTGATGACAATGTCCAAGCAGTGGAATCCGATGACAATGGCCAAGCAGTGGAATCTGATGACAATGGCCAAGCTGTGGAATATGATCAAGGAAACTGGGAAATAGGTTTTAATGGTAATCCCAGCCGATGGCAGGGTGATCTTGTTGGAACAAGTGATGAAGATGTTGAAGCTTCTGAAGATGACAATGACAATGAGAATGGCATTGAAGAGAATGAAGAGGATTCAGATGCAGATGTTATGAGCGAGGGTTCAGATGCTACTGCAAACAGAATTGTAAATGAAGAAGAAAGCTCAGACTCTGATGTCTCTGAAGATTCTTCTGATTAG 5283 0.4306 MEGEACSEGEDNRRRGGTDDDSNENNNNKIVNSNEGQSKPKRQMKTPFQLETLEKAYAVDNYPSETMRGELSEKLGLSDRQLQMWFCHRRLKDKKDLTSKKLPRKMVAEPLPESPTDDPMLGPSELGNEYGSGSGSGSSPYARVEPLNIVPRGVPGYYESPRAMMENRAIACVEAQLGEPLREDGPILGVEFDPLPPDAFGAPLATEQQKLPNFAYDSKIYERHDSRANKAMARTFRDYRSLPSQSGPRSDTPGPFSKSHLHDAMEGPARNPHLALGNETVPRIRPSQGQFRARLLSQQDKQLIPYQSPTRGDNTAPIREFDPSILNVGTSSHFADHQTVVPENHHAQPSGQVLHNNNATRIEKKRKGDDVRDVEAHEMKIRKEIEKQDNLRRKNEERMRKEIEKQDRERKKEEERLMRERQREEERAKREQKREIERREKFLLKENLKAEKMKIREELRKEKEAERRKAALEKATARRIAKESMELIEDEQLEMMELAATSKGFSSIIHLDFDTLQHIESFRDSLCVFPPKSVKLRKPFAIKPWINSEKNVGNLLMVWRFLITFADVLELWSFTLDEFVQAFHDYDSRLLGEIHVALLKVVIKDIEDVARTPSTGLGSNQNGAANSGGGHPEIVEGAYAWGFDIRNWHKHLNLLTWPEIFRQLALSAGYGPQLKKRSATCSYANNKDEGRSCEDIISKLRNGSAAENAVAKMQERGLLAPRRSRHRLTPGTVKFAAFHVLSLEGDKGLTVLELAEKIQKSGLRDLTTSKTPEASISVALTRDTKLFERIAPSTYCVRQAFRKNPADAESILSEARKKIQIFENGFLAEEDTDDVEREESESDEIDEDPEVDDLVNSSSANKTSEPCDDFSSNGKENLGHDVGLQGEFDKDLPRFPESSSKKVDTPIAVTGKPGACEDLNVGNLGEDNMEIDESKPGESWVQGLAEGEYSDLSVEERLNALVVLVGVANEGNSIRVVLEDRLEAANALKKQMWAEAQLDKFRLKDDIFSKSDFPSLNGNKVEVQYSCPAMEGNQSPSLLGINIGNNSNNVPSPSTAENQKAALGVQSLSVEKHSSVQDLCTGGPDNPQIQTFAQYSKRSRSQLKSYIFHIAEEMCAYRSLPLGQDRRRNRYWQFVASASSNDPGSGRIFVEFLDGNWRLIDTEEAFDALLNSLDSRGVRESHLRLMLQKVEGSFKENVRNNTQCSKAGSRGETCVKNEADETDSSPDRHTGSDSPSSTLCGLNSDSLETSSSFKIELGKSESDKKSALRRYQDFQKWTWKECYNSSKLCAMKYGKKRCKPQVVVCDICLNPYFFEDSHCSCCHRTFPSNNGFNFSKHAFQCGDKLSKEICILDSSLPLRTRLLKALLAYIEVSIPPEAFQSNWIEDIRRHWSVKLSKSSSVEELLQILALLERALKRDFLSSTFSTTGEQLGLNTMSESAAQTSADPESVAVLPWVPLTTSAVSLRLFEFDESIVYVLHEKPEPREEKEDRQYIKLPSRHNASKSIKVAETVDMGHDEFMKVKSRTVKIVQSNNKRGRGSALKGRSKSISKTKQNNGRRHSAKVAGNLNQRVKQQGGGSQGRGRRTVRKRRVGKKAVEDLLLDHRGASRSNNIARESLRNLDEDWDDEKASPMTPIHMGTANVSNSTEEAESDDNVQAVESDDNGQAVESDDNGQAVEYDQGNWEIGFNGNPSRWQGDLVGTSDEDVEASEDDNDNENGIEENEEDSDADVMSEGSDATANRIVNEEESSDSDVSEDSSD 1760
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g01428 1760 CDD homeodomain 41 95 IPR001356 GO:0003677
Viun3g01428 1760 MobiDBLite consensus disorder prediction 1 49 - -
Viun3g01428 1760 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 1118 1190 IPR028941 -
Viun3g01428 1760 Gene3D - 22 98 - -
Viun3g01428 1760 MobiDBLite consensus disorder prediction 854 871 - -
Viun3g01428 1760 MobiDBLite consensus disorder prediction 1532 1594 - -
Viun3g01428 1760 MobiDBLite consensus disorder prediction 828 853 - -
Viun3g01428 1760 MobiDBLite consensus disorder prediction 23 45 - -
Viun3g01428 1760 MobiDBLite consensus disorder prediction 888 911 - -
Viun3g01428 1760 MobiDBLite consensus disorder prediction 1559 1581 - -
Viun3g01428 1760 Pfam Homeodomain 39 95 IPR001356 GO:0003677
Viun3g01428 1760 ProSiteProfiles HARE-type HTH domain profile. 731 800 IPR007759 GO:0006355
Viun3g01428 1760 MobiDBLite consensus disorder prediction 828 876 - -
Viun3g01428 1760 Pfam DDT domain 551 605 IPR018501 -
Viun3g01428 1760 MobiDBLite consensus disorder prediction 238 276 - -
Viun3g01428 1760 MobiDBLite consensus disorder prediction 1637 1652 - -
Viun3g01428 1760 Coils Coil 445 476 - -
Viun3g01428 1760 ProSiteProfiles DDT domain profile. 549 608 IPR018501 -
Viun3g01428 1760 MobiDBLite consensus disorder prediction 1213 1228 - -
Viun3g01428 1760 MobiDBLite consensus disorder prediction 1 22 - -
Viun3g01428 1760 ProSiteProfiles 'Homeobox' domain profile. 36 96 IPR001356 GO:0003677
Viun3g01428 1760 MobiDBLite consensus disorder prediction 391 434 - -
Viun3g01428 1760 MobiDBLite consensus disorder prediction 1229 1244 - -
Viun3g01428 1760 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 20 1760 IPR044977 GO:0006357
Viun3g01428 1760 MobiDBLite consensus disorder prediction 1624 1760 - -
Viun3g01428 1760 MobiDBLite consensus disorder prediction 1704 1732 - -
Viun3g01428 1760 SUPERFAMILY Homeodomain-like 26 95 IPR009057 -
Viun3g01428 1760 SMART HOX_1 38 100 IPR001356 GO:0003677
Viun3g01428 1760 Coils Coil 374 439 - -
Viun3g01428 1760 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 937 979 IPR028942 -
Viun3g01428 1760 SMART testlast3 549 608 IPR018501 -
Viun3g01428 1760 MobiDBLite consensus disorder prediction 106 143 - -
Viun3g01428 1760 MobiDBLite consensus disorder prediction 239 253 - -
Viun3g01428 1760 MobiDBLite consensus disorder prediction 1532 1551 - -
Viun3g01428 1760 Pfam HB1, ASXL, restriction endonuclease HTH domain 731 799 IPR007759 GO:0006355
Viun3g01428 1760 MobiDBLite consensus disorder prediction 1201 1244 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g01428 Viun-Chr3 9012970 9023378 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g01428 4 1691 Homeobox Transcription Factor Family AT1G28420 48.025 0.0 1312
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Viun3g01428 WSD 2.1e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g01428 - - gmx:100818817 2663.26