Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g01427 ATGGAGGGAGAGGCTTGTTCCGAGGGAGAGGATAATCGGAGAAGGGGTGGCACAGACGATGATAGCAATGAGAATAACAACAACAAGATTGTGAATTCTAATGAGGGGCAGAGCAAGCCCAAGCGCCAGATGAAAACCCCTTTTCAACTTGAAACCCTCGAGAAGGCTTATGCTGTGGATAATTATCCGTCGGAGACGATGAGGGGAGAACTTTCTGAGAAATTAGGTTTGTCGGATCGGCAGCTACAGATGTGGTTCTGCCATAGGAGGTTGAAGGACAAGAAGGACTTGACGTCCAAGAAACTGCCACGGAAGATGGTGGCAGAGCCTTTGCCGGAATCACCTACAGATGACCCCATGCTGGGCCCCTCGGAGCTTGGTAATGAGTATGGATCCGGGTCCGGTTCAGGTTCCAGCCCTTATGCCCGAGTGGAGCCCCTGAACATTGTTCCTCGGGGTGTGCCTGGTTATTACGAGTCCCCACGGGCTATGATGGAGAATAGAGCAATTGCTTGTGTTGAGGCGCAGTTAGGAGAGCCGTTGAGGGAAGATGGACCAATTCTAGGAGTAGAGTTTGATCCATTGCCTCCAGATGCCTTTGGAGCACCTTTAGCAGCAGCAACAGAACAGCAGAAGCTACCCAATTTTGCCTATGACAGTAAAATATATGAAAGACATGATAGTAGAGCCAATAAGGCTATGGCAAGGACATTCCGTGACTATCGATCTCTACCGAGCCAGTCTGGCCCTAGGTCTGATACTCCTGGACCGTTCAGCAAATCTCATTTACATGATGCAATGGAAGGTCCTGCCAGAAATCCTCATTTGGCTCTTGGAAATGAAACTGTACCTAGAATTCGTCCTAGTCAAGGTCAATTTCGTGCTCGTCTTTTGTCTCAACAAGATAAGCAATTGATTCCGTATCAGTCTCCTACGCGGGGTGATAATACCGCCCCAATTAGGGAATTTGACCCATCCATACTTAATGTTGGAACGAGCTCTCACTTTGCTGATCACCAAACTGTTGTGCCAGAAAATCACCATGCTCAACCTAGTGGTCAAGTTTTGCATAACAACAATGCAACACGGATTGAGAAGAAACGAAAGGGTGATGATGTTCGTGATGTAGAAGCGCATGAGATGAAAATCCGGAAAGAGATTGAGAAGCAAGATAACCTTAGACGAAAGAATGAAGAGAGGATGAGAAAAGAAATAGAGAAACAAGATCGTGAAAGAAAGAAGGAAGAAGAGAGGTTAATGCGTGAGAGACAACGAGAAGAGGAAAGAGCAAAACGGGAGCAAAAACGCGAAATTGAGCGGAGGGAAAAATTTTTGCTGAAAGAAAATTTAAAAGCAGAAAAAATGAAGATAAGAGAAGAGCTTCGCAAAGAGAAAGAAGCAGAGAGAAGGAAAGCTGCCCTTGAGAAGGCGACTGCCCGTAGAATAGCTAAGGAATCTATGGAACTTATTGAGGATGAACAGCTGGAAATGATGGAGTTGGCTGCCACAAGCAAGGGGTTTTCCTCTATTATTCATCTTGATTTTGATACTCTGCAACATATTGAGTCATTTAGGGATTCATTGTGTGTTTTCCCACCAAAGAGTGTCAAGCTAAGAAAGCCATTTGCAATCAAACCCTGGATCAACTCAGAGAAGAATGTTGGCAATCTTCTCATGGTTTGGAGATTTTTGATTACTTTTGCTGATGTTCTGGAGTTATGGTCTTTTACTCTAGATGAGTTTGTTCAAGCATTTCATGACTATGATTCAAGATTATTGGGTGAGATACATGTTGCTCTTCTTAAGGTGGTAATAAAAGACATTGAAGATGTTGCAAGGACACCTTCTACAGGATTAGGATCGAACCAAAATGGTGCTGCTAACTCTGGAGGTGGTCATCCAGAGATTGTGGAAGGCGCATATGCATGGGGCTTTGACATAAGGAATTGGCATAAGCACTTGAATCTATTGACATGGCCAGAAATTTTCCGACAGCTAGCTTTATCTGCAGGATATGGACCACAGTTAAAGAAAAGAAGTGCTACCTGTTCATATGCAAATAATAAAGACGAGGGAAGAAGTTGTGAAGATATCATTTCTAAACTTCGTAACGGTTCAGCAGCTGAAAATGCAGTCGCAAAAATGCAGGAGAGAGGTCTGTTAGCCCCTCGAAGATCTAGACATCGATTAACTCCTGGTACAGTTAAATTTGCAGCATTTCATGTTCTATCCCTTGAGGGTGACAAGGGATTGACAGTACTAGAGCTTGCAGAAAAAATTCAGAAATCTGGTCTTCGAGATCTGACGACCAGCAAGACACCTGAGGCATCAATTTCTGTTGCTTTAACAAGAGATACCAAGCTTTTTGAAAGAATAGCTCCATCAACATATTGTGTACGTCAGGCATTTAGAAAGAACCCTGCTGATGCCGAGTCCATTCTTTCAGAAGCAAGAAAGAAAATTCAGATATTTGAAAATGGGTTTCTAGCTGAGGAGGATACAGATGATGTTGAAAGAGAAGAGTCAGAGAGTGACGAAATTGATGAGGACCCTGAAGTTGATGATTTGGTTAATTCTTCAAGTGCAAACAAAACATCTGAACCGTGTGATGATTTCTCATCAAATGGAAAAGAAAATTTGGGCCATGATGTTGGACTTCAGGGTGAGTTTGATAAGGATCTGCCTCGTTTTCCTGAGAGTTCTTCCAAGAAGGTTGATACTCCAATTGCTGTAACCGGGAAACCTGGTGCTTGTGAAGATTTGAACGTTGGAAATCTTGGTGAAGATAATATGGAAATTGATGAAAGCAAGCCCGGAGAGTCATGGGTTCAAGGGCTTGCAGAAGGAGAGTATTCTGACCTCAGTGTAGAGGAGCGTCTAAATGCTCTTGTTGTGTTGGTTGGTGTGGCAAATGAAGGAAATTCAATCCGTGTTGTTCTTGAGGATCGTTTGGAAGCAGCAAATGCTCTGAAGAAACAAATGTGGGCAGAAGCACAACTGGATAAATTTCGATTAAAAGATGATATTTTCAGTAAATCTGATTTTCCATCTCTTAATGGGAATAAAGTTGAAGTACAATATTCTTGTCCCGCCATGGAGGGAAACCAAAGCCCTTCGTTGCTTGGCATTAATATTGGCAACAATAGTAATAATGTGCCCTCTCCCAGCACTGCAGAAAATCAAAAAGCAGCTCTAGGTGTACAGAGCCTGTCTGTTGAAAAACACTCTTCCGTTCAAGATCTGTGCACTGGTGGCCCAGATAACCCTCAGATTCAGACATTTGCTCAGTATTCAAAAAGGTCACGGTCTCAGCTGAAATCTTATATTTTCCACATAGCAGAGGAGATGTGTGCCTACAGATCCTTACCCCTTGGGCAAGATCGAAGACGTAACCGTTATTGGCAATTTGTTGCATCTGCTTCTTCCAATGATCCTGGCTCTGGCAGGATCTTTGTTGAATTTCTTGATGGCAATTGGAGGCTGATTGATACTGAAGAGGCCTTTGATGCGCTTCTGAATTCCCTTGATTCGCGTGGGGTCAGGGAATCTCATTTGCGACTAATGTTGCAAAAGGTTGAGGGTTCCTTTAAGGAAAATGTCCGTAATAATACTCAATGTTCTAAAGCTGGAAGCAGAGGCGAAACATGTGTTAAAAATGAAGCTGACGAAACAGATTCCAGTCCTGATCGCCATACTGGATCTGACAGTCCCAGTAGCACCCTTTGTGGCTTGAACTCTGACAGTTTGGAAACTTCCTCATCCTTCAAAATTGAGCTTGGGAAAAGTGAGAGCGACAAGAAATCTGCATTGAGAAGGTATCAAGATTTTCAAAAGTGGACATGGAAAGAATGCTATAACTCATCAAAATTATGCGCCATGAAATATGGGAAGAAAAGATGCAAACCTCAGGTTGTCGTCTGTGATATCTGTCTCAATCCTTATTTCTTTGAAGACTCCCATTGCAGTTGTTGCCACCGAACTTTTCCCTCAAATAATGGATTTAATTTTTCTAAACACGCATTTCAATGCGGAGACAAATTATCAAAAGAGATTTGTATTTTGGATTCGTCTCTTCCCTTACGGACAAGATTGCTTAAGGCCCTGCTAGCTTATATTGAGGTTTCTATTCCACCTGAAGCTTTTCAATCAAATTGGATCGAAGATATTAGGAGGCATTGGAGTGTGAAGTTGAGCAAATCATCTTCTGTAGAGGAATTGCTACAGATATTGGCCCTACTTGAGAGAGCATTGAAGCGGGACTTTCTATCATCAACCTTCTCTACGACAGGGGAACAGTTGGGGTTGAACACTATGTCAGAGAGTGCTGCACAAACCTCTGCTGATCCTGAATCAGTTGCTGTACTTCCATGGGTTCCACTGACCACTTCAGCCGTGTCTCTCAGGCTTTTTGAGTTTGATGAATCAATTGTCTACGTACTGCATGAGAAACCTGAACCTCGTGAGGAGAAAGAAGATAGGCAGTACATAAAGCTTCCTTCAAGACACAATGCTTCCAAATCTATTAAAGTGGCTGAAACAGTAGACATGGGCCATGATGAATTCATGAAAGTTAAATCTCGTACTGTGAAAATTGTGCAAAGCAACAACAAACGAGGACGAGGTAGTGCTCTCAAAGGACGGAGTAAAAGTATATCTAAAACCAAGCAAAATAACGGCCGTCGGCACAGTGCAAAGGTTGCCGGGAATCTAAATCAAAGGGTAAAACAACAGGGAGGGGGATCACAAGGACGTGGTCGTCGAACAGTCCGGAAAAGAAGAGTGGGGAAAAAGGCTGTTGAAGATCTGTTGCTAGACCATAGGGGTGCCTCTCGTAGCAACAACATTGCTAGAGAATCATTAAGAAACTTGGATGAGGATTGGGATGATGAAAAAGCAAGTCCTATGACCCCCATCCATATGGGGACTGCTAACGTTAGTAACAGCACTGAAGAGGCTGAATCTGATGACAATGTCCAAGCAGTGGAATCCGATGACAATGGCCAAGCAGTGGAATCTGATGACAATGGCCAAGCTGTGGAATATGATCAAGGAAACTGGGAAATAGGTTTTAATGGTAATCCCAGCCGATGGCAGGGTGATCTTGTTGGAACAAGTGATGAAGATGTTGAAGCTTCTGAAGATGACAATGACAATGAGAATGGCATTGAAGAGAATGAAGAGGATTCAGATGCAGATGTTATGAGCGAGGGTTCAGATGCTACTGCAAACAGAATTGTAAATGAAGAAGAAAGCTCAGACTCTGATGTCTCTGAAGATTCTTCTGATTAG 5289 0.4309 MEGEACSEGEDNRRRGGTDDDSNENNNNKIVNSNEGQSKPKRQMKTPFQLETLEKAYAVDNYPSETMRGELSEKLGLSDRQLQMWFCHRRLKDKKDLTSKKLPRKMVAEPLPESPTDDPMLGPSELGNEYGSGSGSGSSPYARVEPLNIVPRGVPGYYESPRAMMENRAIACVEAQLGEPLREDGPILGVEFDPLPPDAFGAPLAAATEQQKLPNFAYDSKIYERHDSRANKAMARTFRDYRSLPSQSGPRSDTPGPFSKSHLHDAMEGPARNPHLALGNETVPRIRPSQGQFRARLLSQQDKQLIPYQSPTRGDNTAPIREFDPSILNVGTSSHFADHQTVVPENHHAQPSGQVLHNNNATRIEKKRKGDDVRDVEAHEMKIRKEIEKQDNLRRKNEERMRKEIEKQDRERKKEEERLMRERQREEERAKREQKREIERREKFLLKENLKAEKMKIREELRKEKEAERRKAALEKATARRIAKESMELIEDEQLEMMELAATSKGFSSIIHLDFDTLQHIESFRDSLCVFPPKSVKLRKPFAIKPWINSEKNVGNLLMVWRFLITFADVLELWSFTLDEFVQAFHDYDSRLLGEIHVALLKVVIKDIEDVARTPSTGLGSNQNGAANSGGGHPEIVEGAYAWGFDIRNWHKHLNLLTWPEIFRQLALSAGYGPQLKKRSATCSYANNKDEGRSCEDIISKLRNGSAAENAVAKMQERGLLAPRRSRHRLTPGTVKFAAFHVLSLEGDKGLTVLELAEKIQKSGLRDLTTSKTPEASISVALTRDTKLFERIAPSTYCVRQAFRKNPADAESILSEARKKIQIFENGFLAEEDTDDVEREESESDEIDEDPEVDDLVNSSSANKTSEPCDDFSSNGKENLGHDVGLQGEFDKDLPRFPESSSKKVDTPIAVTGKPGACEDLNVGNLGEDNMEIDESKPGESWVQGLAEGEYSDLSVEERLNALVVLVGVANEGNSIRVVLEDRLEAANALKKQMWAEAQLDKFRLKDDIFSKSDFPSLNGNKVEVQYSCPAMEGNQSPSLLGINIGNNSNNVPSPSTAENQKAALGVQSLSVEKHSSVQDLCTGGPDNPQIQTFAQYSKRSRSQLKSYIFHIAEEMCAYRSLPLGQDRRRNRYWQFVASASSNDPGSGRIFVEFLDGNWRLIDTEEAFDALLNSLDSRGVRESHLRLMLQKVEGSFKENVRNNTQCSKAGSRGETCVKNEADETDSSPDRHTGSDSPSSTLCGLNSDSLETSSSFKIELGKSESDKKSALRRYQDFQKWTWKECYNSSKLCAMKYGKKRCKPQVVVCDICLNPYFFEDSHCSCCHRTFPSNNGFNFSKHAFQCGDKLSKEICILDSSLPLRTRLLKALLAYIEVSIPPEAFQSNWIEDIRRHWSVKLSKSSSVEELLQILALLERALKRDFLSSTFSTTGEQLGLNTMSESAAQTSADPESVAVLPWVPLTTSAVSLRLFEFDESIVYVLHEKPEPREEKEDRQYIKLPSRHNASKSIKVAETVDMGHDEFMKVKSRTVKIVQSNNKRGRGSALKGRSKSISKTKQNNGRRHSAKVAGNLNQRVKQQGGGSQGRGRRTVRKRRVGKKAVEDLLLDHRGASRSNNIARESLRNLDEDWDDEKASPMTPIHMGTANVSNSTEEAESDDNVQAVESDDNGQAVESDDNGQAVEYDQGNWEIGFNGNPSRWQGDLVGTSDEDVEASEDDNDNENGIEENEEDSDADVMSEGSDATANRIVNEEESSDSDVSEDSSD 1762
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g01427 1762 CDD homeodomain 41 95 IPR001356 GO:0003677
Viun3g01427 1762 MobiDBLite consensus disorder prediction 1 49 - -
Viun3g01427 1762 MobiDBLite consensus disorder prediction 240 275 - -
Viun3g01427 1762 Gene3D - 22 98 - -
Viun3g01427 1762 MobiDBLite consensus disorder prediction 241 255 - -
Viun3g01427 1762 MobiDBLite consensus disorder prediction 1534 1553 - -
Viun3g01427 1762 MobiDBLite consensus disorder prediction 23 45 - -
Viun3g01427 1762 Pfam Homeodomain 39 95 IPR001356 GO:0003677
Viun3g01427 1762 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 1120 1192 IPR028941 -
Viun3g01427 1762 Coils Coil 447 478 - -
Viun3g01427 1762 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 20 1762 IPR044977 GO:0006357
Viun3g01427 1762 SMART testlast3 551 610 IPR018501 -
Viun3g01427 1762 MobiDBLite consensus disorder prediction 856 873 - -
Viun3g01427 1762 MobiDBLite consensus disorder prediction 1231 1246 - -
Viun3g01427 1762 MobiDBLite consensus disorder prediction 1215 1230 - -
Viun3g01427 1762 MobiDBLite consensus disorder prediction 1534 1596 - -
Viun3g01427 1762 MobiDBLite consensus disorder prediction 393 436 - -
Viun3g01427 1762 MobiDBLite consensus disorder prediction 830 855 - -
Viun3g01427 1762 MobiDBLite consensus disorder prediction 890 913 - -
Viun3g01427 1762 Pfam DDT domain 553 607 IPR018501 -
Viun3g01427 1762 MobiDBLite consensus disorder prediction 1561 1583 - -
Viun3g01427 1762 Coils Coil 376 441 - -
Viun3g01427 1762 ProSiteProfiles HARE-type HTH domain profile. 733 802 IPR007759 GO:0006355
Viun3g01427 1762 MobiDBLite consensus disorder prediction 1 22 - -
Viun3g01427 1762 MobiDBLite consensus disorder prediction 830 878 - -
Viun3g01427 1762 ProSiteProfiles 'Homeobox' domain profile. 36 96 IPR001356 GO:0003677
Viun3g01427 1762 MobiDBLite consensus disorder prediction 1639 1654 - -
Viun3g01427 1762 MobiDBLite consensus disorder prediction 1203 1246 - -
Viun3g01427 1762 SUPERFAMILY Homeodomain-like 26 95 IPR009057 -
Viun3g01427 1762 SMART HOX_1 38 100 IPR001356 GO:0003677
Viun3g01427 1762 Pfam HB1, ASXL, restriction endonuclease HTH domain 733 801 IPR007759 GO:0006355
Viun3g01427 1762 ProSiteProfiles DDT domain profile. 551 610 IPR018501 -
Viun3g01427 1762 MobiDBLite consensus disorder prediction 106 143 - -
Viun3g01427 1762 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 939 981 IPR028942 -
Viun3g01427 1762 MobiDBLite consensus disorder prediction 1626 1762 - -
Viun3g01427 1762 MobiDBLite consensus disorder prediction 1706 1734 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g01427 Viun-Chr3 9012970 9023378 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g01427 4 1693 Homeobox Transcription Factor Family AT1G28420 48.027 0.0 1310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Viun3g01427 WSD 2.1e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g01427 - - gmx:100818817 2669.8