Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g01424 ATGACACAACCACTCACCATCGTCGTTTGCGTTCTGTTATCGGTAGTGGCGTGTGTATCGTGTCTGAACCAAGAGGGGCTTTACCTGTACCAACTCAAGCTCTCTCTCGACGACCCTGACTCCACTCTCTCCTCCTGGAACCCCAGGGACGCCACCCCTTGCAACTGGTATGGTGTAACCTGCGCCGGCGATGCCTCCAACACCTCTGTAACAGAACTCGACCTTTCCGACACCAACATCGGAGGCCCATTCCCCACCAACATCCTCTGTCGTCTCCCCAACCTCCTCTCCATAAACTTCTTCAACAACTCCATCAACCAAACCCTCCCTCTCGACATCTACCTCTGCCGCTCTCTCCGCCACCTCGACCTCTCCCAGAACCTCCTCACCGGTCCCCTCCCCGCCACGCTCCCGCTCCTCCCCAACCTCCGCTACCTCGACCTCACCGGCAACAACTTCTCCGGCCCAATCCCGGACTCCTTCGGAACCTTCCAGAACCTCCAGGTGCTCTCCCTCGTCTCCAATCTTCTAGAAGGTACCATCCCCCCCTCCTTGGGCAACGTCTCCTCTTTGAAAATGCTCAACCTCTCTTACAACCCCTTCTTCCCGGGTCGGATCCCTCCGGAGCTCGGCAACCTCACCAACCTCGAGGTTCTCTGGCTCACCCAATGCAACCTTGTCGGAGTCATTCCAACCTCCCTCGGGAACCTCAACAAGCTCCAGGACCTGGACCTCGCGCTCAATGACCTCTACGGCTCCATCCCCAGTTCGCTCACTCAGTTAACCAGCCTCACGCAGATCGAGTTGTACAACAACTCGCTCTCCGGGGAGTTGCCTCGGGGAATGGGGAACCTCACCCGCTTGAGGCTCCTCGACGCCTCAATGAACCACTTAACGGGGAGGATTCCCGACGAGCTTTGTTCTTTGCCGTTGGAGAGTTTTAATTTGTACGAAAACCGTTTCGAGGGAGAGTTACCGGCCAGCATTGCGGATTCCGAGAATCTTTACGAGCTTCGTCTCTTCGGGAACCGCCTCACTGGCAGGTTACCGGCGAATCTCGGCAAGAATTCTCCGCTCCGGTGGCTGGACGTTTCGAGCAACCAGTTCTGGGGACCTATTCCGGCGACGCTCTGTGATAATGGTGTCCTTGAGGAGCTTCTGGTGATTTATAATCTTTTCTCTGGCGAGATTCCGGCGAGCTTAGGCACGTGCCAGAGCTTAACACGTGTGAGGCTCGGATTCAACCGGTTGTCCGGCGAGGTTCCCGCCGGCATCTGGGGGCTTCCGCACGTCTATCTTCTCGAGCTTGTCGACAACTCGTTTTCGGGTTCCATTGCGAGGACCATTGCGGGTGCTGGGAACTTGTCGCTGTTGATCTTGTCGAAGAATAACTTCTCGGGAACTATTCCCGATGAGGTTGGGTGGTTGGAGAATCTCGTGGAGTTTTCCGCCAGCGATAATAAGTTTACTGGCTCGCTTCCTGATAGCATTGTGAATCTTGGACAGCTTGGGATTCTCGATTTTCATAATAACAGACTCTCTGGAGAGTTGCCGAAAGGGATTCATGCGTGGAAGAAGCTCAACGATTTGAATTTGGCCAACAATGAGATTAGTGGTACGATTCCTGATGAGATTGGGGGTTTGTTCGTGTTGAACTTTCTAGATCTTTCCAGCAACCGCTTTTCCGGGAAAATCCCTCACGGGTTGCAGAACCTCAAGCTGAATCAGCTTAACTTGTCTTATAATCGTTTGACCGGTGAACTTCCTCCTCTCTTGGCTAAGGATATGTATAGGTCTAGTTTCCTTGGTAATCCTGGCTTGTGTGGAGATTTGAAGGGGTTGTGTGATGGTAGGGGTGAGGCAAAGAATGTAGGTTATGTTTGGCTGCTTCGAGCGATTTTTGTTATAGCCACTTTGGTTTTCCTTGTAGGTGTGGTTTGGTTTTACTTTAGGTATAAGAATTTCCAGGACGCCAAGAGGGCGATTGATAAGTCAAAGTGGACGTTGATGTCGTTTCATAAACTGGGTTTTAGTGAAGATGAGATTTTGAATTGTCTTGATGAGGATAATGTGATTGGAAGTGGTTCCTCGGGTAAGGTTTACAAGGTTGTGCTTAGCAGTGGGGAGGTTGTTGCTGTGAAGAAGATATGGGGAGGGGTTAGGAAGGAGGTAGAAAGCGGGGATGTTGAAAAGGGTAGGGTTCAGGACAATGCTTTTGACGCGGAGGTTGAGACTTTGGGCAAGATCAGGCACAAGAATATAGTCAAGCTGTGGTGTTGTTGCACCACCAGGGATTGCAAGCTCTTGGTTTATGAATACATGCCTAATGGAAGTCTTGGTGATTTGCTGCATAGTAGTAAAGGAGGGTTGTTGGATTGGCCAACAAGGTATAAGATAGCTGTGGATGCAGCAGAAGGCCTCTCTTATCTGCATCATGACTGTGTTCCCCCAATTGTTCACAGAGATGTGAAATCAAACAACATTTTATTGGATGGGGACTTCGGTGCGAGGGTGGCTGATTTTGGAGTAGCTAAGGCGGTTGAAACCACAGCAAAAGGAACTAAATCCATGTCCGTCATAGCTGGCTCTTGTGGCTATATTGCACCAGAATATGCATACACGCTCAGAGTGAATGAGAAGAGCGACATATACAGCTTCGGGGTTGTCATACTGGAGTTGGTTACTGGAAGACGCCCGGTGGACCCTGAATTTGGGGAGAAAGACGTAGTTAAGTGGGTGTGCACTACCTTGGACCAGAAAGGCGTGGACCATCTAATTGACTCAAGGCTTGATTCTTGTTTCAAAGAAGAAATTTGCAAGGTCTTCAACATTGGACTTATGTGCACTAGTCCTCTTCCTATTAACCGGCCTTCAATGAGAAGAGTAGTGAAGATGTTGCAAGAAGTGGGCACAGAGAACCAAACCAAGCCTGCCAAAAAAGATGGGAAGCTATCCCCTTATTACTATGACGATGCCTCGGATCATGGAAGTATTGCTTAA 3000 0.5047 MTQPLTIVVCVLLSVVACVSCLNQEGLYLYQLKLSLDDPDSTLSSWNPRDATPCNWYGVTCAGDASNTSVTELDLSDTNIGGPFPTNILCRLPNLLSINFFNNSINQTLPLDIYLCRSLRHLDLSQNLLTGPLPATLPLLPNLRYLDLTGNNFSGPIPDSFGTFQNLQVLSLVSNLLEGTIPPSLGNVSSLKMLNLSYNPFFPGRIPPELGNLTNLEVLWLTQCNLVGVIPTSLGNLNKLQDLDLALNDLYGSIPSSLTQLTSLTQIELYNNSLSGELPRGMGNLTRLRLLDASMNHLTGRIPDELCSLPLESFNLYENRFEGELPASIADSENLYELRLFGNRLTGRLPANLGKNSPLRWLDVSSNQFWGPIPATLCDNGVLEELLVIYNLFSGEIPASLGTCQSLTRVRLGFNRLSGEVPAGIWGLPHVYLLELVDNSFSGSIARTIAGAGNLSLLILSKNNFSGTIPDEVGWLENLVEFSASDNKFTGSLPDSIVNLGQLGILDFHNNRLSGELPKGIHAWKKLNDLNLANNEISGTIPDEIGGLFVLNFLDLSSNRFSGKIPHGLQNLKLNQLNLSYNRLTGELPPLLAKDMYRSSFLGNPGLCGDLKGLCDGRGEAKNVGYVWLLRAIFVIATLVFLVGVVWFYFRYKNFQDAKRAIDKSKWTLMSFHKLGFSEDEILNCLDEDNVIGSGSSGKVYKVVLSSGEVVAVKKIWGGVRKEVESGDVEKGRVQDNAFDAEVETLGKIRHKNIVKLWCCCTTRDCKLLVYEYMPNGSLGDLLHSSKGGLLDWPTRYKIAVDAAEGLSYLHHDCVPPIVHRDVKSNNILLDGDFGARVADFGVAKAVETTAKGTKSMSVIAGSCGYIAPEYAYTLRVNEKSDIYSFGVVILELVTGRRPVDPEFGEKDVVKWVCTTLDQKGVDHLIDSRLDSCFKEEICKVFNIGLMCTSPLPINRPSMRRVVKMLQEVGTENQTKPAKKDGKLSPYYYDDASDHGSIA 999
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g01424 999 Pfam Leucine rich repeat 141 200 IPR001611 GO:0005515
Viun3g01424 999 Gene3D Transferase(Phosphotransferase) domain 1 774 992 - -
Viun3g01424 999 Gene3D Ribonuclease Inhibitor 383 615 IPR032675 -
Viun3g01424 999 Gene3D Ribonuclease Inhibitor 279 382 IPR032675 -
Viun3g01424 999 Gene3D Ribonuclease Inhibitor 176 278 IPR032675 -
Viun3g01424 999 ProSitePatterns Protein kinases ATP-binding region signature. 692 715 IPR017441 GO:0005524
Viun3g01424 999 ProSiteProfiles Protein kinase domain profile. 686 969 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g01424 999 MobiDBLite consensus disorder prediction 974 988 - -
Viun3g01424 999 Pfam Leucine Rich repeat 66 82 IPR001611 GO:0005515
Viun3g01424 999 Pfam Protein kinase domain 688 909 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g01424 999 ProSitePatterns Serine/Threonine protein kinases active-site signature. 818 830 IPR008271 GO:0004672|GO:0006468
Viun3g01424 999 SUPERFAMILY Protein kinase-like (PK-like) 681 966 IPR011009 -
Viun3g01424 999 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 22 188 - -
Viun3g01424 999 SMART serkin_6 686 988 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g01424 999 SUPERFAMILY L domain-like 311 446 - -
Viun3g01424 999 MobiDBLite consensus disorder prediction 970 999 - -
Viun3g01424 999 Pfam Leucine Rich Repeat 118 137 IPR001611 GO:0005515
Viun3g01424 999 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 774 983 - -
Viun3g01424 999 Gene3D Ribonuclease Inhibitor 21 175 IPR032675 -
Viun3g01424 999 Gene3D Phosphorylase Kinase; domain 1 670 773 - -
Viun3g01424 999 FunFam Receptor-like protein kinase HSL1 670 773 - -
Viun3g01424 999 Pfam Leucine rich repeat N-terminal domain 23 61 IPR013210 -
Viun3g01424 999 SUPERFAMILY RNI-like 97 553 - -
Viun3g01424 999 FunFam Leucine-rich receptor-like protein kinase family protein 206 304 - -
Viun3g01424 999 FunFam Receptor-like protein kinase HSL1 310 617 - -
Viun3g01424 999 SMART LRR_typ_2 164 188 IPR003591 -
Viun3g01424 999 SMART LRR_typ_2 500 524 IPR003591 -
Viun3g01424 999 SMART LRR_typ_2 213 236 IPR003591 -
Viun3g01424 999 SMART LRR_typ_2 285 309 IPR003591 -
Viun3g01424 999 SMART LRR_typ_2 237 261 IPR003591 -
Viun3g01424 999 SMART LRR_typ_2 92 116 IPR003591 -
Viun3g01424 999 SMART LRR_typ_2 140 163 IPR003591 -
Viun3g01424 999 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 429 546 IPR046959 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g01424 Viun-Chr3 8942470 8946817 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g01424 19 999 Receptor kinase-like Gene Family AT1G28440 72.166 0.0 1446
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Viun3g01424 Pkinase 3e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g01424 - - gmx:100819887 1768.82