Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g01422 ATGACATGGTGCAATGACTCAGACGAGGAGAGGGGAATTCAACTGCTTGCGCCCACTATTACTCCTGCAACTAACAACAACACAAAACAAACCGAAAATCGCACCATAACTTGCCCCTCATGTGGCCATAACATCGAATTCCAAGATCAGACCGGAATCAATGACTTGCCGGGGTTACCGGCTGGTGTGAAATTTGATCCGAATGACCAAGAGATATTAGAGCACTTGGAAGCAAAGGTACTTTCTGATGTTCCCAAGCTCCATCCCCTCATTGATGAGTTCATACCAACGCTCGAAGGGGAGAACGGGATCTGTTATACGCATCCAGAAAAGCTTCCAGGTGTAAGCAAAGATGGACAGATCCGACACTTCTTTCATAGGCCATCGAAAGCATACACGACCGGAACAAGGAAGAGAAGAAAGGTTCACACCGACGAAGAGGGAAGCGAGACAAGGTGGCACAAAACAGGAAAAACCAGACCAGTTTTTGTTGGTGGTGCAGTGAAGGGTTTCAAGAAAATACTGGTGCTGTACACCAACTACGGGAGGCAAAAGAAGCCGGAGAAGACGAACTGGGTGATGCATCAGTACCATCTTGGGAGCAATGAAGAAGAGAAAGATGGGGAATTAGTGGTTTCAAAGGTGTTCTACCAAACACAACCTCGACAATGTGGTACTTCCATCATAAAACAGGATCTGTACGATGAAGAAAGATTGACTAACCAAAGTGTTGTTGATGATGATAATAATAACATAGTAGGTAGAAGTGGAACTCTTATGGACTACTACAACAACCCTTCTTTCATAAATTATGAGCATGTTGGTGGTCGCAATAACAGGGAAACTTCACCTCAACTTATCCCAAATTTGGTCATGCAAGCTGATACCTCTTCTTTCATTCGCTTAGCGATGGATGCCACCAAAGCCAGGCTCAACACAAAATAG 945 0.4466 MTWCNDSDEERGIQLLAPTITPATNNNTKQTENRTITCPSCGHNIEFQDQTGINDLPGLPAGVKFDPNDQEILEHLEAKVLSDVPKLHPLIDEFIPTLEGENGICYTHPEKLPGVSKDGQIRHFFHRPSKAYTTGTRKRRKVHTDEEGSETRWHKTGKTRPVFVGGAVKGFKKILVLYTNYGRQKKPEKTNWVMHQYHLGSNEEEKDGELVVSKVFYQTQPRQCGTSIIKQDLYDEERLTNQSVVDDDNNNIVGRSGTLMDYYNNPSFINYEHVGGRNNRETSPQLIPNLVMQADTSSFIRLAMDATKARLNTK 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g01422 314 SUPERFAMILY NAC domain 54 218 IPR036093 GO:0003677|GO:0006355
Viun3g01422 314 Pfam No apical meristem (NAM) protein 60 199 IPR003441 GO:0003677|GO:0006355
Viun3g01422 314 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 21 231 IPR044799 GO:0003700
Viun3g01422 314 MobiDBLite consensus disorder prediction 138 153 - -
Viun3g01422 314 MobiDBLite consensus disorder prediction 132 153 - -
Viun3g01422 314 Gene3D NAC domain 68 222 IPR036093 GO:0003677|GO:0006355
Viun3g01422 314 ProSiteProfiles NAC domain profile. 59 218 IPR003441 GO:0003677|GO:0006355
Viun3g01422 314 FunFam NAC domain-containing protein 73 68 222 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g01422 Viun-Chr3 8920043 8923187 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g01422 1 228 NAC Transcription Factor Family AT4G28500 72.926 7.18e-126 360
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Viun3g01422 NAM 1.9e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g01422 - - vra:106766970 614.379