Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g01398 ATGCGAACTTCATGGGCTGATTTGGCTGCAAATTCTGCAGCTGAAAATTCGGGTCCCGGGTTTTCTGCTAACAATGTGGGAACTGGTAGCACTGGTAGCACTGTAGCTCCTTCACGACCAGTTTATGTTCCTCCTCATCTTAGGAACCGCCAGCCATCAGCGGAAGCCCCAGCCCCATCCCCAGCCCCGGCATACAGTGGTCCTTCTTCTGGTTCTGTTGGCTCTAGTGCTGCTGGTAATTCTGGATCCCGTTGGCCTGCACCCAGAAACGATCATCGTTCTGGGTATGGTGGTGGTGGACGCCCAGGTGGATGGGGAAATAGAAGTGGTGGATGGGATCGTGGCAGGGAAGTCAACCCCTTTGAAGAAGAGGATAATGCTGAAGAGGCATTTAATGAGCAGGAGAATACAGGAATAAATTTTGATGCATATGAGGACATTCCGGTGGAGACTAGTGGTGAAAATGTGCCCCCACCTGTGAATACATTTGCAGAGATTGACTTGGGTGATGCACTTAATCAGAATATAAGAAGGTGCAAATATGTGAAACCAACACCTGTTCAGCGGCATGCTATACCAATATCTCTAGGTGGACGGGATTTGATGGCTTGTGCACAGACTGGTTCTGGAAAGACAGCTGCATTCTGTTTCCCGATCATCAGTGGAATTATGAGGGGCCAACCTGTCCATAGGCCACCTCGTGGGGTGCGCACTGTGTATCCACTTGCGCTTGTTCTCTCTCCTACGAGGGAGCTATCAATGCAAATACATGAAGAGGCTAGGAAGTTTTCATTCCAAACTGGTGTTAAGGTGGTTGTTGCTTATGGTGGAGCACCAATAAACCAGCAGCTGCGGGATCTTGAGAGAGGGGTGGACATTCTTGTTGCAACTCCTGGAAGACTGGTAGATTTACTGGAGAGAGCTAGAGTTTCACTGCAGATGATTCGATATCTAGCCTTAGATGAGGCAGACCGGATGCTAGATATGGGTTTTGAGCCACAAATAAGAAAGATTGTAGAACAAATGGACATGCCTCCACCAGGTGCTAGACAGACTATGTTGTTCAGTGCAACATTTCCGAAAGAGATACAGAGACTGGCTTCTGACTTTCTTTCAAATTATATTTTCCTTGCTGTTGGAAGAGTGGGTTCAAGTACTGATTTAATTGTCCAAAGAGTTGAATATGTTCAAGAGTCTGACAAGAGAAGTCACCTAATGGATCTTCTTCATGCACAGAGGGCAAATGGTGTACAGGGAAAGCAAGCTTTGACTTTAGTTTTTGTGGAGACAAAGAAGGGAGCTGATTCACTGGAACACTGGTTGTGTCTTAATGGTTTTCCTGCAACTACTATTCATGGTGACAGGTCGCAGCAGGAAAGAGAACTAGCATTGAGGTCTTTTAAAAGTGGCAACACCCCCATATTGGTTGCTACAGATGTTGCTGCACGTGGTCTTGATATCCCCCATGTTGCTCATGTAGTGAACTTTGACCTGCCAAATGATATTGATGATTATGTACACCGAATTGGAAGAACAGGGCGAGCTGGAAAGAAAGGTCTTGCAACTGCATTCTTTAATGATAACAATTCATCACTAGCTAGAGCTTTAGCAGATCTGATGCAAGAAGCAAATCAAGAAGTACCTGCTTGGCTCTCTCGGTATGCTGCTCGGTCTTATGGTGGAGGGAGAAACCGCAGATCAGGTGGTCGGTTTGGTAGTCGTGACTTTCGGAGAGAGGGCTCTTTTACAAGGGGTTCTTCAGATTACTACAGTTCAGGAAACAGCAGTGGTGGATATGGAAGCTCTGGTGGATATGCTGGAGGAGGAGGGTATGGTCCTGGCGTCACTAGTGCCTGGGACTGA 1863 0.4697 MRTSWADLAANSAAENSGPGFSANNVGTGSTGSTVAPSRPVYVPPHLRNRQPSAEAPAPSPAPAYSGPSSGSVGSSAAGNSGSRWPAPRNDHRSGYGGGGRPGGWGNRSGGWDRGREVNPFEEEDNAEEAFNEQENTGINFDAYEDIPVETSGENVPPPVNTFAEIDLGDALNQNIRRCKYVKPTPVQRHAIPISLGGRDLMACAQTGSGKTAAFCFPIISGIMRGQPVHRPPRGVRTVYPLALVLSPTRELSMQIHEEARKFSFQTGVKVVVAYGGAPINQQLRDLERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPPGARQTMLFSATFPKEIQRLASDFLSNYIFLAVGRVGSSTDLIVQRVEYVQESDKRSHLMDLLHAQRANGVQGKQALTLVFVETKKGADSLEHWLCLNGFPATTIHGDRSQQERELALRSFKSGNTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKKGLATAFFNDNNSSLARALADLMQEANQEVPAWLSRYAARSYGGGRNRRSGGRFGSRDFRREGSFTRGSSDYYSSGNSSGGYGSSGGYAGGGGYGPGVTSAWD 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g01398 620 MobiDBLite consensus disorder prediction 1 37 - -
Viun3g01398 620 MobiDBLite consensus disorder prediction 560 579 - -
Viun3g01398 620 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 388 555 IPR001650 -
Viun3g01398 620 FunFam Probable ATP-dependent RNA helicase DDX4 123 379 - -
Viun3g01398 620 MobiDBLite consensus disorder prediction 65 83 - -
Viun3g01398 620 CDD DEADc_DDX3_DDX4 162 383 IPR044763 GO:0003724|GO:0005524
Viun3g01398 620 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 192 377 IPR014001 -
Viun3g01398 620 SMART helicmild6 435 516 IPR001650 -
Viun3g01398 620 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 242 533 IPR027417 -
Viun3g01398 620 Gene3D - 380 559 IPR027417 -
Viun3g01398 620 MobiDBLite consensus disorder prediction 1 129 - -
Viun3g01398 620 FunFam ATP-dependent RNA helicase RhlB 380 559 - -
Viun3g01398 620 Pfam DEAD/DEAH box helicase 185 366 IPR011545 GO:0003676|GO:0005524
Viun3g01398 620 Pfam Helicase conserved C-terminal domain 401 516 IPR001650 -
Viun3g01398 620 Gene3D - 116 379 IPR027417 -
Viun3g01398 620 SMART ultradead3 180 392 IPR014001 -
Viun3g01398 620 CDD SF2_C_DEAD 389 525 - -
Viun3g01398 620 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 161 189 IPR014014 GO:0003724
Viun3g01398 620 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 131 555 - -
Viun3g01398 620 MobiDBLite consensus disorder prediction 592 620 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g01398 Viun-Chr3 8786984 8797289 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g01398 159 548 Eukaryotic Initiation Factors Gene Family AT3G19760 31.969 7.69e-62 209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g01398 K11594 - gmx:100795756 1004.97