Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g01353 ATGGAAGATCAAAAGCAAAGGGTGAAGGAAGAGATGTTGTGTGATAAAGTGAAGATGAAGAACAAGAGGAAGTTTGTTGGAGTCAGACAAAGAGCTTCAGGGAAATGGGCTGCAGAGATCAAAGACACGTCAAAGAAGATTAGGATGTGGCTCGGTACTTATCAAACTGCTGAGGAAGCTGCTCGAGCTTATGATGAAGCTGCATGTCTCCTTAGAGGTTCAAACACTCGCACAAATTTCTTTGCTCAACCCTCTACCACCATTGCTGCAAATTCTCCTATTTCCTTAAAACTCAGAAATCTCCTTCATCAGAACGCCATGTCAAATCAAAGTCAAGTTCAAAACCAGCCATCTAGTGTAACTCCAACAACTCCAAATATCAATAACATCATGGTCATGGAAGAAACCTCTGGTTTTAGTGGTGAAGGTAATAACAATAAGTCTTTGTTTGTGATTCAGAACCAGGTCTCTAATAACACGTATGGAATAGATATGAATATGATCAATTGTGTGATGGGTATCACACCAGATGCATCTCAACTTGATTTCTCTTGGCCTTTTCCCCATCAAAGAATTAACGAATTACCAAAAGATGGTTTCAGTGTAGAAAGGCAATTATCAGACTCGGTATATGCAACTAATGAGTGCCACCATTTGGAGGATACATATGAATATGATGTTAATTATCCTCACTCTCACTTTTTTTGCTTCACTTGA 717 0.3919 MEDQKQRVKEEMLCDKVKMKNKRKFVGVRQRASGKWAAEIKDTSKKIRMWLGTYQTAEEAARAYDEAACLLRGSNTRTNFFAQPSTTIAANSPISLKLRNLLHQNAMSNQSQVQNQPSSVTPTTPNINNIMVMEETSGFSGEGNNNKSLFVIQNQVSNNTYGIDMNMINCVMGITPDASQLDFSWPFPHQRINELPKDGFSVERQLSDSVYATNECHHLEDTYEYDVNYPHSHFFCFT 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g01353 238 Gene3D AP2/ERF domain 23 82 IPR036955 GO:0003700|GO:0006355
Viun3g01353 238 ProSiteProfiles AP2/ERF domain profile. 24 81 IPR001471 GO:0003700|GO:0006355
Viun3g01353 238 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 16 121 - -
Viun3g01353 238 PRINTS Ethylene responsive element binding protein signature 47 63 IPR001471 GO:0003700|GO:0006355
Viun3g01353 238 PRINTS Ethylene responsive element binding protein signature 25 36 IPR001471 GO:0003700|GO:0006355
Viun3g01353 238 SUPERFAMILY DNA-binding domain 24 81 IPR016177 GO:0003677
Viun3g01353 238 FunFam ethylene-responsive transcription factor RAP2-11 23 82 - -
Viun3g01353 238 Pfam AP2 domain 24 73 IPR001471 GO:0003700|GO:0006355
Viun3g01353 238 SMART rav1_2 24 87 IPR001471 GO:0003700|GO:0006355
Viun3g01353 238 CDD AP2 24 80 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g01353 Viun-Chr3 8591883 8593001 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g01353 1 214 AP2-EREBP Transcription Factor Family AT5G19790 42.017 4.26e-39 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Viun3g01353 AP2 3e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g01353 K09286 - gmx:100809046 291.967
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g01353 3 8591883 8593001 Viun3g01353 3 8591883 8593001 ECH