Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g01329 ATGGCAGAGCTCACTCCGAAGAAGGAAAACCCGAACCTTCTGCTGGGCCGGTTCGAGCTGGGAAAACTCCTGGGGCACGGAACCTTCGCGAAGGTTCACCACGCCAGGAACATCAAAACCGGGGAAGGAGTGGCCATCAAGATCATAAACAAGGAGAAGATCCTGAAGGGCGGTTTGGTGTCCCACATCAAGCGCGAGATCTCCATCCTCCGCCGCGTCCGCCACCCCAACATCGTCCAACTCTTCGAAGTCATGGCCACCAAAACCAAGATCTACTTCGTCATGGAGTTCGTGCGCGGCGGGGAGCTCTTCAACAAGGTCGCCAAGGGAAGGTTGAAGGAAGAAGTTGCCAGAAAGTACTTCCAGCAGCTGGTTTCCGCGGTGGAGTTTTGCCATGCGCGCGGGGTGTTCCACAGGGACATCAAGCCCGAGAATTTGCTGCTGGATGAGGATGGGAACCTTAAAGTCTCCGACTTCGGACTCAGTGCTGTGTCGGATCAGATTAGGCAGGACGGGCTATTCCACACGTTTTGTGGGACACCCGCGTATGTTGCTCCTGAGGTTTTGGCGCGGAAAGGGTACGATGGTGCCAAGGTTGATATTTGGTCTTGTGGGGTTGTTTTGTTTGTTTTGATGGCGGGGTATTTGCCTTTCCATGACCGTAATGTTATGGCCATGTATAAGAAGATTTACAGGGGCGAGTTTCGGTGTCCCAGGTGGTTCTCTCCTGAACTTACTAGACTTCTCTGTGGGCTTCTTGATACCAACCCTCAGACCAGGATTTCTATTCCTGAAATCATGGAAAATCGGTGGTTCAAGAAGGGTTTCAAGCAGATAAAGTTCTATGTGGAGGATGATAGAGTTTGTAGTTTTGATGATAAGTTGCAGTTCCATGATGGCGGTGGGGATGATGATTTGGCAACATCGGATTCTGAGGTTGAAATTAGGAGGAAGAATAGTCATAATCATAATGCTTCCTTGCCAAGGCCTGCTAGTTTGAATGCATTTGACATCATATCGTTTTCTCAGGGCTTTGATCTCTCTGGGTTGTTTGAGGAAAAAGGGGATGAGGCCAGGTTTGTTTCTTCTGCTCCAGTGTCTAAGATTATATCCAAATTGGAGGAGGTTGCTCAGTTGGTTAGCTTCACGGTGAGGAAGAAAGATTGCAGGGTGAGCTTGGAGGGCTCTAGAGAAGGCGTGAAGGGTCCTTTGACCATTGCAGCTGAGATTTTCGAGTTGACACCTTCCTTGGTGGTTGTGGAGGTCAAGAAAAAGGGAGGGGATAAGGCAGAGTATGATAGGTTTTGTAACTCTGAGTTGAGACCCGCTTTGGAGAATTTGGTTAAGGAGGAATCTGCTTCTTCGTCTCACCATTCTACACACATTGATTCTGAACTGCATCAACGAACATTCTCTGACTCTGCCCTTAACATTCTTTCAGACAGTGAAAGTTTGTATCGACGACAAGACTTGCCTGAAGTAGAAAAAACTAGTATCCGAAAACATGGTGAATCAATATTTGAAATCTCATAG 1533 0.4821 MAELTPKKENPNLLLGRFELGKLLGHGTFAKVHHARNIKTGEGVAIKIINKEKILKGGLVSHIKREISILRRVRHPNIVQLFEVMATKTKIYFVMEFVRGGELFNKVAKGRLKEEVARKYFQQLVSAVEFCHARGVFHRDIKPENLLLDEDGNLKVSDFGLSAVSDQIRQDGLFHTFCGTPAYVAPEVLARKGYDGAKVDIWSCGVVLFVLMAGYLPFHDRNVMAMYKKIYRGEFRCPRWFSPELTRLLCGLLDTNPQTRISIPEIMENRWFKKGFKQIKFYVEDDRVCSFDDKLQFHDGGGDDDLATSDSEVEIRRKNSHNHNASLPRPASLNAFDIISFSQGFDLSGLFEEKGDEARFVSSAPVSKIISKLEEVAQLVSFTVRKKDCRVSLEGSREGVKGPLTIAAEIFELTPSLVVVEVKKKGGDKAEYDRFCNSELRPALENLVKEESASSSHHSTHIDSELHQRTFSDSALNILSDSESLYRRQDLPEVEKTSIRKHGESIFEIS 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g01329 510 CDD STKc_SnRK3 17 271 - -
Viun3g01329 510 SUPERFAMILY Protein kinase-like (PK-like) 14 273 IPR011009 -
Viun3g01329 510 FunFam Non-specific serine/threonine protein kinase 8 321 - -
Viun3g01329 510 FunFam Non-specific serine/threonine protein kinase 330 448 - -
Viun3g01329 510 Pfam Protein kinase domain 19 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g01329 510 Gene3D Transferase(Phosphotransferase) domain 1 8 326 - -
Viun3g01329 510 SMART serkin_6 18 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g01329 510 CDD CIPK_C 334 444 - -
Viun3g01329 510 Pfam NAF domain 330 386 IPR004041 GO:0007165
Viun3g01329 510 ProSiteProfiles Protein kinase domain profile. 18 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g01329 510 ProSiteProfiles NAF domain profile. 328 352 IPR018451 GO:0007165
Viun3g01329 510 ProSitePatterns Protein kinases ATP-binding region signature. 24 47 IPR017441 GO:0005524
Viun3g01329 510 Gene3D Kinase associated domain 1, KA1 330 450 - -
Viun3g01329 510 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 10 444 - -
Viun3g01329 510 ProSitePatterns Serine/Threonine protein kinases active-site signature. 136 148 IPR008271 GO:0004672|GO:0006468
Viun3g01329 510 FunFam Non-specific serine/threonine protein kinase 9 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g01329 Viun-Chr3 8388811 8390831 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g01329 4 463 CBL-interacting serine-threonine protein kinases AT4G18700 77.322 0.0 743
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Viun3g01329 Pkinase 2.4e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g01329 - - gmx:100807567 859.751