Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g01328 ATGGAAAGCATATGGGGCCCATATGGATTGTGGCTCAGAATTTATGTTGGATTGATTTCTCTATGGGGAACTCAACTGTGTTTGTCTCTAAACGATGAAGGATTGTCCTTGTTGGAATTTCGGGGAAGAATAACTTCTGATCCTTTTCATGCTCTGGCAAATTGGAATCCAAATGATTGTAACCCTTGCCAGTGGTTTGGTGTTCGTTGTGTAGGTGGTAAAGTGCGAAAGCTGGTCCTACCTGAACTATCTTTGGAAGGCACATTGGCTCCTGAGCTTGGGAAACTTAGTCATCTAAAATCCCTTATATTATACAAGAACAGTTTTGCTGGTACTATTCCCGAAGAACTTGGTGATCTAAACAAGCTGGAGTTATTTGATCTAAGGGGGAATAACATGACTGGATGTGTCCCAGCAGAAATTGGCCATTTGTTGTTGTCAGAACAATTGTTAATTTGTGACAAGAAATGTGAAGGCAGTGATTCTAAAGAGGTTGGAAAGGTCAGATTGCTCTGTAGTATCAGTCGTTCAACTCCTTTGACAACTTTATCACTTGGAAAGAACCGAAAGGTTGCACCCAGAAATTATAAGCAATGGAATGAGGCAGATTCATCTTTTATTCCACTTAAAGTAGCGCTAAAAAAATACGCCAATGCTGTCCTTGCTGTGGCACTGCCACTGCTCAAGCTAGTAAAGGCCACCCCTCATGCCTATGTAGAGAAATGGTGTGGCATTCTGAGTGGCTCTGATGATTCAGAGATTGACCAAAATGTAGAAAATCTAGTCAATTCAGCACGGCGGAAGTTGCTTGATGAGTCCAGTAACCTTGCAGCTGCACCTTTCAATGGACCTACTATACAGATCAGTTCTATTCCAATTACCCAGAGCAGTGGAGCTTTTCCAGCCTACCCAGACACCAATAAGAATCAAAATCACTCACCTGCACAATTGCCTTCACCTTCTACAGATCAACCAAGTCAACCAACTTCAGCTAATGTTGCTTCTGGAAAATTATGGGAGTATATTATTATAATAGCAGGTGTAGCTGTCTTGGTCATTATTATTTTTATCATGCTTTGCATTTGGCGAAAACGAGCAGCAAAAGTAATAAAGCCATGGAAAACAGGAATAAGTGGACAGCTGCAGAAAGCATTTATAACAGGGGTCCCCAAGTTGAATCAGGCAGAGCTGGAGACAGCCTGTGAAGATTTCAGCAATATTATTAATACTTTTGATGAATGCACCATATATAAGGGAACACTATCCAGTGGAGTCGAGATTGCTGTTGATTCAACTATTGTTAAGTCGGCGCGTGATTGGTCAAAGACAATGGAGACGGCCTATCGCAAAAAGATTGCCACATTATCCCGTGTTAACCACAAGAACTTTACCAATCTTATTGGGTACTGTGATGAAGAAGAACCATTCACCAGGATGATGGTATTTGAGTATGCTCCGAATGGAAGCTTATTTGAGCATCTGCATGTTAAGGAAGTTGAACATCTTGATTGGAGCGCAAGAATGAGAGTTATTATGGGCACAGCATATTGTCTTCAGTATATGCACCATGATCTGAATCCACCAGTGGCTCATTCCAACCTCAATTCAATTGCTATATTATTGACAGATGACTTTGCTGCTAAGATATCAGAAATAGCTTTTGGCAAGAATGTATCATCACAAGCCAACACACCTGGACATGAGTCACAGAAAGGTGACTTGCCACCCCATGCTGATCCTGAAACCGATGTCTACAACTTTGGAGTGTTGTTGCTTGAAATCATTTCTGGAAAACTACCCTACTCTGAAGAACATGGCAACATTACTGACTGGGCTGGTGAGCACTTGAATAATAAGCAAAGCGTGAGCAATCTGATTGATCCCTCGCTGGAGTCGTTCAAAGAAGAAGAACTTGATGTGATATGCGAGGTGATCAAAGAATGTCTTCAATCTGATGCAAGACTAAGACCAACGATGAAGGACCTAGCTCCCAGATTGAGGGAAGTGCTTCATGTATCACCTGAGCAAGCTGTTCCAAGACTCTCTCCTCTCTGGTGGGCTGAACTGGAGATCTTATCATTGGAGACCTCTTAA 2094 0.4193 MESIWGPYGLWLRIYVGLISLWGTQLCLSLNDEGLSLLEFRGRITSDPFHALANWNPNDCNPCQWFGVRCVGGKVRKLVLPELSLEGTLAPELGKLSHLKSLILYKNSFAGTIPEELGDLNKLELFDLRGNNMTGCVPAEIGHLLLSEQLLICDKKCEGSDSKEVGKVRLLCSISRSTPLTTLSLGKNRKVAPRNYKQWNEADSSFIPLKVALKKYANAVLAVALPLLKLVKATPHAYVEKWCGILSGSDDSEIDQNVENLVNSARRKLLDESSNLAAAPFNGPTIQISSIPITQSSGAFPAYPDTNKNQNHSPAQLPSPSTDQPSQPTSANVASGKLWEYIIIIAGVAVLVIIIFIMLCIWRKRAAKVIKPWKTGISGQLQKAFITGVPKLNQAELETACEDFSNIINTFDECTIYKGTLSSGVEIAVDSTIVKSARDWSKTMETAYRKKIATLSRVNHKNFTNLIGYCDEEEPFTRMMVFEYAPNGSLFEHLHVKEVEHLDWSARMRVIMGTAYCLQYMHHDLNPPVAHSNLNSIAILLTDDFAAKISEIAFGKNVSSQANTPGHESQKGDLPPHADPETDVYNFGVLLLEIISGKLPYSEEHGNITDWAGEHLNNKQSVSNLIDPSLESFKEEELDVICEVIKECLQSDARLRPTMKDLAPRLREVLHVSPEQAVPRLSPLWWAELEILSLETS 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g01328 697 MobiDBLite consensus disorder prediction 302 330 - -
Viun3g01328 697 Gene3D Phosphorylase Kinase; domain 1 373 484 - -
Viun3g01328 697 MobiDBLite consensus disorder prediction 559 578 - -
Viun3g01328 697 SUPERFAMILY L domain-like 31 188 - -
Viun3g01328 697 Pfam Protein tyrosine and serine/threonine kinase 415 665 IPR001245 GO:0004672|GO:0006468
Viun3g01328 697 Pfam Leucine rich repeat N-terminal domain 31 70 IPR013210 -
Viun3g01328 697 PANTHER PROTEIN MALE DISCOVERER 2 21 694 - -
Viun3g01328 697 SUPERFAMILY Protein kinase-like (PK-like) 395 665 IPR011009 -
Viun3g01328 697 Gene3D Transferase(Phosphotransferase) domain 1 485 678 - -
Viun3g01328 697 Gene3D Ribonuclease Inhibitor 32 204 IPR032675 -
Viun3g01328 697 FunFam Leucine-rich repeat receptor-like kinase 35 152 - -
Viun3g01328 697 FunFam Inactive receptor-like serine/threonine-protein kinase 376 484 - -
Viun3g01328 697 ProSiteProfiles Protein kinase domain profile. 367 670 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g01328 Viun-Chr3 8375842 8382175 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g01328 62 669 Receptor kinase-like Gene Family AT5G56040 24.030 5.65e-44 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-2 Viun3g01328 PK_Tyr_Ser-Thr 7.3e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g01328 - - gmx:100808098 1073.92