Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g01327 ATGGAAAGCATATGGGGCCCATATGGATTGTGGCTCAGAATTTATGTTGGATTGATTTCTCTATGGGGAACTCAACTGTGTTTGTCTCTAAACGATGAAGGATTGTCCTTGTTGGAATTTCGGGGAAGAATAACTTCTGATCCTTTTCATGCTCTGGCAAATTGGAATCCAAATGATTGTAACCCTTGCCAGTGGTTTGGTGTTCGTTGTGTAGGTGGTAAAGTGCGAAAGCTGGTCCTACCTGAACTATCTTTGGAAGGCACATTGGCTCCTGAGCTTGGGAAACTTAGTCATCTAAAATCCCTTATATTATACAAGAACAGTTTTGCTGGTACTATTCCCGAAGAACTTGGTGATCTAAACAAGCTGGAGTTATTTGATCTAAGGGGGAATAACATGACTGGATGTGTCCCAGCAGAAATTGGCCATTTGTTGTTGTCAGAACAATTGTTAATTTGTGACAAGAAATGTGAAGGCAGTGATTCTAAAGAGGTTGGAAAGGTCAGATTGCTCTGTAGTATCAGTCGTTCAACTCCTTTGACAACTTTATCACTTGGAAAGAACCGAAAGGTTGCACCCAGGCTCAAGCTAGTAAAGGCCACCCCTCATGCCTATGTAGAGAAATGGTGTGGCATTCTGAGTGGCTCTGATGATTCAGAGATTGACCAAAATGTAGAAAATCTAGTCAATTCAGCACGGCGGAAGTTGCTTGATGAGTCCAGTAACCTTGCAGCTGCACCTTTCAATGGACCTACTATACAGATCAGTTCTATTCCAATTACCCAGAGCAGTGGAGCTTTTCCAGCCTACCCAGACACCAATAAGAATCAAAATCACTCACCTGCACAATTGCCTTCACCTTCTACAGATCAACCAAGTCAACCAACTTCAGCTAATGTTGCTTCTGGAAAATTATGGGAGTATATTATTATAATAGCAGGTGTAGCTGTCTTGGTCATTATTATTTTTATCATGCTTTGCATTTGGCGAAAACGAGCAGCAAAAGTAATAAAGCCATGGAAAACAGGAATAAGTGGACAGCTGCAGAAAGCATTTATAACAGGGGTCCCCAAGTTGAATCAGGCAGAGCTGGAGACAGCCTGTGAAGATTTCAGCAATATTATTAATACTTTTGATGAATGCACCATATATAAGGGAACACTATCCAGTGGAGTCGAGATTGCTGTTGATTCAACTATTGTTAAGTCGGCGCGTGATTGGTCAAAGACAATGGAGACGGCCTATCGCAAAAAGATTGCCACATTATCCCGTGTTAACCACAAGAACTTTACCAATCTTATTGGGTACTGTGATGAAGAAGAACCATTCACCAGGATGATGGTATTTGAGTATGCTCCGAATGGAAGCTTATTTGAGCATCTGCATGTTAAGGAAGTTGAACATCTTGATTGGAGCGCAAGAATGAGAGTTATTATGGGCACAGCATATTGTCTTCAGTATATGCACCATGATCTGAATCCACCAGTGGCTCATTCCAACCTCAATTCAATTGCTATATTATTGACAGATGACTTTGCTGCTAAGATATCAGAAATAGCTTTTGGCAAGAATGTATCATCACAAGCCAACACACCTGGACATGAGTCACAGAAAGGTGACTTGCCACCCCATGCTGATCCTGAAACCGATGTCTACAACTTTGGAGTGTTGTTGCTTGAAATCATTTCTGGAAAACTACCCTACTCTGAAGAACATGGCAACATTACTGACTGGGCTGGTGAGCACTTGAATAATAAGCAAAGCGTGAGCAATCTGATTGATCCCTCGCTGGAGTCGTTCAAAGAAGAAGAACTTGATGTGATATGCGAGGTGATCAAAGAATGTCTTCAATCTGATGCAAGACTAAGACCAACGATGAAGGACCTAGCTCCCAGATTGAGGGAAGTGCTTCATGTATCACCTGAGCAAGCTGTTCCAAGACTCTCTCCTCTCTGGTGGGCTGAACTGGAGATCTTATCATTGGAGACCTCTTAA 1995 0.4206 MESIWGPYGLWLRIYVGLISLWGTQLCLSLNDEGLSLLEFRGRITSDPFHALANWNPNDCNPCQWFGVRCVGGKVRKLVLPELSLEGTLAPELGKLSHLKSLILYKNSFAGTIPEELGDLNKLELFDLRGNNMTGCVPAEIGHLLLSEQLLICDKKCEGSDSKEVGKVRLLCSISRSTPLTTLSLGKNRKVAPRLKLVKATPHAYVEKWCGILSGSDDSEIDQNVENLVNSARRKLLDESSNLAAAPFNGPTIQISSIPITQSSGAFPAYPDTNKNQNHSPAQLPSPSTDQPSQPTSANVASGKLWEYIIIIAGVAVLVIIIFIMLCIWRKRAAKVIKPWKTGISGQLQKAFITGVPKLNQAELETACEDFSNIINTFDECTIYKGTLSSGVEIAVDSTIVKSARDWSKTMETAYRKKIATLSRVNHKNFTNLIGYCDEEEPFTRMMVFEYAPNGSLFEHLHVKEVEHLDWSARMRVIMGTAYCLQYMHHDLNPPVAHSNLNSIAILLTDDFAAKISEIAFGKNVSSQANTPGHESQKGDLPPHADPETDVYNFGVLLLEIISGKLPYSEEHGNITDWAGEHLNNKQSVSNLIDPSLESFKEEELDVICEVIKECLQSDARLRPTMKDLAPRLREVLHVSPEQAVPRLSPLWWAELEILSLETS 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g01327 664 Gene3D Ribonuclease Inhibitor 29 209 IPR032675 -
Viun3g01327 664 SUPERFAMILY L domain-like 31 188 - -
Viun3g01327 664 FunFam Inactive receptor-like serine/threonine-protein kinase 343 451 - -
Viun3g01327 664 Gene3D Phosphorylase Kinase; domain 1 339 451 - -
Viun3g01327 664 SUPERFAMILY Protein kinase-like (PK-like) 362 632 IPR011009 -
Viun3g01327 664 Pfam Protein tyrosine and serine/threonine kinase 382 632 IPR001245 GO:0004672|GO:0006468
Viun3g01327 664 Pfam Leucine rich repeat N-terminal domain 31 70 IPR013210 -
Viun3g01327 664 Gene3D Transferase(Phosphotransferase) domain 1 452 645 - -
Viun3g01327 664 MobiDBLite consensus disorder prediction 526 545 - -
Viun3g01327 664 FunFam Leucine-rich repeat receptor-like kinase 35 152 - -
Viun3g01327 664 MobiDBLite consensus disorder prediction 268 297 - -
Viun3g01327 664 ProSiteProfiles Protein kinase domain profile. 334 637 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g01327 664 PANTHER PROTEIN MALE DISCOVERER 2 21 661 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g01327 Viun-Chr3 8375842 8382175 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g01327 70 646 Receptor kinase-like Gene Family AT5G65700 25.755 2.64e-43 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-2 Viun3g01327 PK_Tyr_Ser-Thr 6.5e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g01327 - - gmx:100808098 1028.47