Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g01323 ATGTCGGATGAATATGAGATGAGTGATGAACAGGTTGATGACAGTTCAATTGGATCATCGCAAAAGTGTTCATCCTTTGATCTGAACGAAGAAGCTAGTAGTGAAGATAATAGCAATGGCAATGATAAGAGGTACGAGGAAGCTAAGGATGAAGGTACTTCAACAAATAAAAGTAGCAGCATAACAAGGGAAGGAAATAGTGAACGAAGAGGTGGTGTGAGACAATATGTTAGATCGAAAATGCCTAGGCTTCGTTGGACACCAGAACTTCATCTTTCCTTTGTGCATGCTGTTGAAAGGCTTGGAGGTCAAGAGAGAGCAACACCGAAGTTGGTGCTTCAGCTAATGAATGTGAGAGGACTCAGCATTGCTCATGTCAAGAGTCATTTGCAGATGTACCGGAGCAAGAAACTCGACGAGGCCGGGCAAGTATTAAGTGAAACATACAAATCAACCCACGAACTTGGTCGTATTTCTCATGTGAGCCATCCTCGTCAACATTTTAAGATGGGAAATGGTGGAATTATTCTGGCAAGTGATTACACCGATCACAGTTATTTCCATGGCCTCTTGCATCCTTCAAACCTATCACACCCACATTCAAGACACCAACAATGGTTCTTCAACAATCATCAACCTTTTAGAAAACCAAGTTACTTTAGCAACGAAGTTGGGTCAGCAACCTTACAAACGCAAGGAAGATCAATGTCTTCAAACCAAATTCAAGTAATGGATGCTACCAGCATTGCACCCATGAGACCAAGCCAATTTCTTGAAGAGAAAAGATGGCCTCCATTAGAAATCATGAACAATCACCCCTGGAAGAAAAGGTTACCTTCTAATACTGACTCACAATCTCTTCTACTTCATCAATTTGGCTCCACAACTTCACCAAACAAAACAAGAATCAGGGAACATCTATCTAACTCCGATGAGCACCGCAGCTATTCCAACACTTTCAAGCTAGAATTTGAACCTCCATTTCGGATTAAGTCGAATCAAGAAAAAATGCAGAACGAGAAGCAGTGGGTGCCTGATCTGCGACTGAGTTTAAGTCAGAGAGATGGGAACAGTGATGGGAAGAATGATCATTGCAGAGAAACCCAAGAAATCAACACGAAACTTTCACTTTCATAG 1137 0.4169 MSDEYEMSDEQVDDSSIGSSQKCSSFDLNEEASSEDNSNGNDKRYEEAKDEGTSTNKSSSITREGNSERRGGVRQYVRSKMPRLRWTPELHLSFVHAVERLGGQERATPKLVLQLMNVRGLSIAHVKSHLQMYRSKKLDEAGQVLSETYKSTHELGRISHVSHPRQHFKMGNGGIILASDYTDHSYFHGLLHPSNLSHPHSRHQQWFFNNHQPFRKPSYFSNEVGSATLQTQGRSMSSNQIQVMDATSIAPMRPSQFLEEKRWPPLEIMNNHPWKKRLPSNTDSQSLLLHQFGSTTSPNKTRIREHLSNSDEHRSYSNTFKLEFEPPFRIKSNQEKMQNEKQWVPDLRLSLSQRDGNSDGKNDHCRETQEINTKLSLS 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g01323 378 NCBIfam myb-like DNA-binding domain, SHAQKYF class 82 137 IPR006447 GO:0003677
Viun3g01323 378 FunFam Myb family transcription factor 80 138 - -
Viun3g01323 378 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 78 138 IPR017930 -
Viun3g01323 378 Pfam Myb-like DNA-binding domain 84 134 IPR001005 -
Viun3g01323 378 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 56 260 IPR046955 GO:0003700
Viun3g01323 378 MobiDBLite consensus disorder prediction 36 53 - -
Viun3g01323 378 MobiDBLite consensus disorder prediction 12 35 - -
Viun3g01323 378 MobiDBLite consensus disorder prediction 351 378 - -
Viun3g01323 378 MobiDBLite consensus disorder prediction 1 76 - -
Viun3g01323 378 SUPERFAMILY Homeodomain-like 80 136 IPR009057 -
Viun3g01323 378 Gene3D - 81 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g01323 Viun-Chr3 8355604 8362443 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g01323 73 139 G2-like Transcription Factor Family AT2G42660 82.090 1.18e-33 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Viun3g01323 Myb_DNA-binding 2.6e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g01323 - - gmx:100808625 640.188
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g01323 3 8355604 8362443 Viun3g01323 3 8355604 8362443 ECH
Viun6g02648 6 30802589 30806950 Viun3g01323 3 8355604 8362443 ECH
Viun3g01323 3 8355604 8362443 Viun6g02648 6 30802589 30806950 PCT