Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g01317 ATGAAGCCCCTTTGCAGATTCTTGATTCTCTTATCGCTATTTGCTCTGGTGGAATCGTCATGCAGCAGTGAAGAAGAGCACGTTTTGGTGTCAAAGGCTTTCAAATCAGTCTCTGGCTTCGACGCTCACTCCTGGTTTCGAACCAACTGTTCACAAGCTCACATCACCAGAATAGTACTTCCATCCCAAAACCTCACCGGCACAATCTCCTGGGGCTACCTCAGGAACATGTCCAACCTTAAGGTTTTCGATCTCTCAGGAAATTCCTTACAGGGCCACGTGCCAAGCTGGTTTTGGTCAACTTCATCCTTGTTGGAAATAAACCTCTCCGGTAACAGGTTCGGAGGGAGCATCATTATCCACTCCTCCAAACCCACAACACAAAACACCTCGTTTTCAATTTCATCCGTTCAAACGCTCAATCTCTCCCACAACAGGTTCACCAATTCAATCCAACTTTCTTCCTTCCACAACCTTAAAATCCTCGACCTTTCCAACAACAACCTGCGAACACTCCCCACCGGACTCCAAAACCTCTCCAGGCTTCATCACCTCGATCTCTCAAGCTGTAATCTCCATAGCGACGTAAAGCCAGTTTCCTCTCTTCACTCACTTCGCTACTTGGACTTATCGAACAACACCTTCACGGGAAATTTCCCTTTTGATTTCCCTCCACTCGCCACCCTCGAATTCCTCAACATCTCCTATAACAACTTCACCTCATCAACTAGCCTAACCAAGTTCAACAGTTTCGGTAAATCAGCTTTTATCCACGCTGGCAACAACTTCACCTACGACAGCACCGCGTCCAAAACGACCAACAACAGTAAAAACTCAGCGCAATCCACCCACAAGAAACAACGGAAGCGAAAATACAAAACGCTGATTGCTGCAGCGTCGTCTGCGGGATTAGCAGTTCTCCTAATTCTGTTGTCCATTTGGGTACTCCGCATTGTTATTCGGAAGAGGAAGCAACGTGCCAAGAGGAGCAAGTGGGCGATTTCGATGCCGGTTCCACTTGGGATGAACGTGGTGACTAGCAGAGTGGAGAAATCAGGGCCGTTCGCTTTCGAGACTGAATCGGGGTCAACGTGGGTGGCTGACCTGAAGGAACCGTCTTCTGCGGCGGTGGTGATGTTTGAGAAGCCGTTGATGAACCTTACTTTCAAGGACCTCATTGTCGCCACGTCACACTTCGGGAAAGACTCGCTGCTGGCGGAGGGAAGGTGTGGACCCGTTTACAGAGCCGTGCTGCCGGGGGACCTCCACGTGGCGATCAAGGTCCTGGAACACGCTAGAGACGTTGATCCTGATGATTCGGTCGCCACGTTCGTTGACCTCTCAAGACTCAAGCACCCCAACTTGTTGCCCCTCTCCGGTTACTGCATTGCTGGTAAGGAGAAACTGGTACTGTACGAGTACATGGCGAACGGCGACCTTGGAAGGTGGCTACACGAGCTTCCAACTGGGGACACCAATGTAGAGGATTGGACAAGCGACACGTGGGAGATACAAAACGGCGCCGTCGACGACGGATCCCCCGAAAAGATGGGGTGGCTGACACGACATCGTATCGCGGTTGGGATAGCGCGTGGTCTCGCGTACCTTCACCACGCGCGTTCGAAGCCCGTGGTGCACGGCCACTTCGTCACCTCCAACATTTTACTCGCAGACGATTTCGAGCCCCGGATCTCCGATTTCGGGTTGCGACATGACCGGAACCCGAACGGAGGCACAGAGGCCGACGTGTACTGCTTCGGGGCAGCGCTGATGGAGCTCCTAACGGGGAGGGAGAGCACGGCGGAGACGGTGGCCGCGGCGAGGAAGGCAGTGAGGGAGGGGCAGGGCGTTAGGGTTCTGGACGAGAGGCTCCTGGTGGGTGGTGACTCGGTGGTGAGTGAGATGGTGGAGACTCTCCGAGTGGCGTTTTTGTGTACGGCGGAACACCCTTGGAAGAGGCCCACAATGCAGCAGGTTTTGGGTTTGGTGAAAGACATTCGTCCTCATGAACAGCAACTCGTGACGAGTTGA 2031 0.5288 MKPLCRFLILLSLFALVESSCSSEEEHVLVSKAFKSVSGFDAHSWFRTNCSQAHITRIVLPSQNLTGTISWGYLRNMSNLKVFDLSGNSLQGHVPSWFWSTSSLLEINLSGNRFGGSIIIHSSKPTTQNTSFSISSVQTLNLSHNRFTNSIQLSSFHNLKILDLSNNNLRTLPTGLQNLSRLHHLDLSSCNLHSDVKPVSSLHSLRYLDLSNNTFTGNFPFDFPPLATLEFLNISYNNFTSSTSLTKFNSFGKSAFIHAGNNFTYDSTASKTTNNSKNSAQSTHKKQRKRKYKTLIAAASSAGLAVLLILLSIWVLRIVIRKRKQRAKRSKWAISMPVPLGMNVVTSRVEKSGPFAFETESGSTWVADLKEPSSAAVVMFEKPLMNLTFKDLIVATSHFGKDSLLAEGRCGPVYRAVLPGDLHVAIKVLEHARDVDPDDSVATFVDLSRLKHPNLLPLSGYCIAGKEKLVLYEYMANGDLGRWLHELPTGDTNVEDWTSDTWEIQNGAVDDGSPEKMGWLTRHRIAVGIARGLAYLHHARSKPVVHGHFVTSNILLADDFEPRISDFGLRHDRNPNGGTEADVYCFGAALMELLTGRESTAETVAAARKAVREGQGVRVLDERLLVGGDSVVSEMVETLRVAFLCTAEHPWKRPTMQQVLGLVKDIRPHEQQLVTS 676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g01317 676 Gene3D Transferase(Phosphotransferase) domain 1 578 675 - -
Viun3g01317 676 ProSiteProfiles Leucine-rich repeat profile. 158 180 IPR001611 GO:0005515
Viun3g01317 676 Gene3D Transferase(Phosphotransferase) domain 1 475 577 - -
Viun3g01317 676 SMART LRR_typ_2 156 178 IPR003591 -
Viun3g01317 676 SMART LRR_typ_2 179 203 IPR003591 -
Viun3g01317 676 SMART LRR_typ_2 77 100 IPR003591 -
Viun3g01317 676 FunFam Putative LRR receptor-like serine/threonine-protein kinase 360 474 - -
Viun3g01317 676 ProSiteProfiles Protein kinase domain profile. 399 672 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g01317 676 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 579 666 - -
Viun3g01317 676 Gene3D Ribonuclease Inhibitor 130 302 IPR032675 -
Viun3g01317 676 FunFam Calmodulin-binding receptor kinase CaMRLK 135 245 - -
Viun3g01317 676 Pfam Leucine rich repeat 55 114 IPR001611 GO:0005515
Viun3g01317 676 Pfam Leucine rich repeat 136 192 IPR001611 GO:0005515
Viun3g01317 676 Pfam Protein tyrosine and serine/threonine kinase 403 573 IPR001245 GO:0004672|GO:0006468
Viun3g01317 676 Gene3D Ribonuclease Inhibitor 15 129 IPR032675 -
Viun3g01317 676 SUPERFAMILY L domain-like 43 243 - -
Viun3g01317 676 SUPERFAMILY Protein kinase-like (PK-like) 389 664 IPR011009 -
Viun3g01317 676 PRINTS Leucine-rich repeat signature 159 172 - -
Viun3g01317 676 PRINTS Leucine-rich repeat signature 202 215 - -
Viun3g01317 676 Gene3D Phosphorylase Kinase; domain 1 359 474 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g01317 Viun-Chr3 8320081 8323171 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g01317 53 666 Receptor kinase-like Gene Family AT5G07280 30.129 2.89e-72 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-2 Viun3g01317 PK_Tyr_Ser-Thr 3e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g01317 - - gmx:100788556 1035.79