Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g01312 ATGTCCACTTCTGTTGTCAATGTGAATGAGTCCGTGACTGGTCACATCATATCCACTACAGTAAAAGAAAAAAATGGGAAGCCCAAACAGACTAGAACTTACCTGGCAGAACGCATTGTGGGGAGTGGGTCATTTGGAATTGTCTTCCTGGCTAAATGCGTGGAAACTGGGGAGCTAGTGGCCATTAAGAAGGTTTTACAGGACAGAAAATGTAAGAGTCGTGAGCTAAAGTTAATGCGCATGATGGACCATCCAAATGTGATCTCTCTGAAGGACCGATTCTTTTCCACTACTGGTGCAGATGAACTTTTTCTTAATTTGGTGATGGAATATGTTCCAGACTCTATGCATCGAGTCTCAAAGTTCTATAGCAACACTAATCAGAGCATGCCACTTATCTTTGTGAAACTTTACATGCACCAGATTTTCCGGGGTCTGGCTTATATCCACACTGTCCCTGGAGTTTGCCACAGAGATTTGAAGCCTCAAAATATACTGGTTGATCCTCTTACACACCAGGTTAAGATATGTGATTTTGGAAGTGCAAAAGTGCTGGTTAAAGGTGAAGCTAATTTATCACACATATGTTCACTTTTCTATCGGGCACCCGAACTAATCTTTGGTGCCACTGAGTACACAACTTCAATTGATATTTGGTCAGCTGGATGTGTCCTTGCTGAACTGCTTTTGGGCAAGCCATTATTTCCCGGCGACAACGCAGTGGACCAACTTGTAGAGATTATCAAGGTTCTTGGCACACCCTCCCAAGAGGAAGTTTGCTGTTCAAATTCAAACAACAATGATTTCAAGTTTCCACAGATATTCCACCAAAAAACGCCTCCAGAAGCAATTGATCTTACTTCCCGGCTCCTGCAGTATTCCCCAACCCTTCGTTGTACTGCGCTAGAAGCATGTGCACACCCATTCTTTGATGAACTCCGTGAACCCAATGCTCAATTGCCAGATGGTAGGCCATTTCCCCCTCTATTCAACTTTAAGCAAGAGTTATCCGGAGCTTCTCCAGAGCTTATTGATAAGTTAATACCTGATCATGCGAAGCGGAAGATAGAGCTACAACATACCCATTTTGATGGAACATGA 1101 0.4323 MSTSVVNVNESVTGHIISTTVKEKNGKPKQTRTYLAERIVGSGSFGIVFLAKCVETGELVAIKKVLQDRKCKSRELKLMRMMDHPNVISLKDRFFSTTGADELFLNLVMEYVPDSMHRVSKFYSNTNQSMPLIFVKLYMHQIFRGLAYIHTVPGVCHRDLKPQNILVDPLTHQVKICDFGSAKVLVKGEANLSHICSLFYRAPELIFGATEYTTSIDIWSAGCVLAELLLGKPLFPGDNAVDQLVEIIKVLGTPSQEEVCCSNSNNNDFKFPQIFHQKTPPEAIDLTSRLLQYSPTLRCTALEACAHPFFDELREPNAQLPDGRPFPPLFNFKQELSGASPELIDKLIPDHAKRKIELQHTHFDGT 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g01312 366 CDD STKc_GSK3 29 313 IPR039192 -
Viun3g01312 366 ProSiteProfiles Protein kinase domain profile. 34 310 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g01312 366 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 3 354 - -
Viun3g01312 366 SMART serkin_6 34 310 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g01312 366 SUPERFAMILY Protein kinase-like (PK-like) 28 334 IPR011009 -
Viun3g01312 366 ProSitePatterns Protein kinases ATP-binding region signature. 40 64 IPR017441 GO:0005524
Viun3g01312 366 Gene3D Phosphorylase Kinase; domain 1 18 113 - -
Viun3g01312 366 Gene3D Transferase(Phosphotransferase) domain 1 115 353 - -
Viun3g01312 366 FunFam Shaggy-related protein kinase kappa 114 353 - -
Viun3g01312 366 Pfam Protein kinase domain 36 310 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g01312 366 ProSitePatterns Serine/Threonine protein kinases active-site signature. 155 167 IPR008271 GO:0004672|GO:0006468
Viun3g01312 366 FunFam Glycogen synthase kinase-3 beta 18 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g01312 Viun-Chr3 8287760 8292997 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g01312 40 318 Core Cell Cycle Gene Families AT1G76540 35.034 6.66e-58 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Viun3g01312 Pkinase 2.9e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g01312 K14502 - gmx:100810237 646.351