Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g01311 ATGATGGATCTGGCCAAAAGCAAAGGCAGTGGTGAAGTTTTGGATCATAATGATGAAAGGGTGGGTGAGGATTTCAACCAATTGGTGGAAGGAAATGCAATTGATGCAGGAGGTGGGCATAACTTAGGTGAAAGCGTTAGTGTAAGTGGGGAAGATGTGACTACAGAAAATATGTGTAAGGGTCTTGGTTTGAATGTGGAGCTAAAGGATGGGCTGCAAGAAGATAATGATCAGAACCTGGGTGGCCCTCAAGAAATTAATGATACATTACATGGGGTTGATCAAGGAACCAGTTATAGTTCAAGAAATTTGATTAGTGGGGAAGTACCCGAGACTTGTGTTGTAATAGATCCTTCCGCTCAGATTGATTGTGTCAGTGGAGAAAATAGGACATTGGAAGCAAAACCTAATGATTCAGGTTTGAGCAAGGTATCCAAGAAAGTGACAAAAGGGGTTTCTGACATCGATAAAAATTCATGTGTGATTGATATAAACCGTGGCAGCTGCGACGGTTTTAGTGAGAATCTGGAAGGTGAATTGATTTGTAGGATTTGCCATCTGGCCTCTGGGCAACCATTAGAAGCAGAAGCTGTTGGCACTGTAAGTAGTGCTACTACTACTAATACAGATTTGATTCAGCTTGGTTGTGCTTGTAAAGATGAATTAGGCATTGCTCATAGTCATTGTGCTGAGGCATGGTTCAAGATTAAAGGAAACAGGTTGTGTGAAATATGTGGTGAGACAGCAAAAAATGTATCGGACGTTGCTGATCATGTGTTGATGGAAGAATGGAATGATACTAGATTCATGGGCACTGATGATACCTCATCCAGAAGGTTTGGTGGATGCTGGCGTGGACAACCATTTTGTAACTTCTTAATGGCATGCCTGGTTATAGCTTTTGTTCTACCATGGTTCTTTCGTGTAAATATGTTCTAG 939 0.4143 MMDLAKSKGSGEVLDHNDERVGEDFNQLVEGNAIDAGGGHNLGESVSVSGEDVTTENMCKGLGLNVELKDGLQEDNDQNLGGPQEINDTLHGVDQGTSYSSRNLISGEVPETCVVIDPSAQIDCVSGENRTLEAKPNDSGLSKVSKKVTKGVSDIDKNSCVIDINRGSCDGFSENLEGELICRICHLASGQPLEAEAVGTVSSATTTNTDLIQLGCACKDELGIAHSHCAEAWFKIKGNRLCEICGETAKNVSDVADHVLMEEWNDTRFMGTDDTSSRRFGGCWRGQPFCNFLMACLVIAFVLPWFFRVNMF 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g01311 312 PANTHER ZINC FINGER, RING-CH-TYPE 88 312 - -
Viun3g01311 312 ProSiteProfiles Zinc finger RING-CH-type profile. 174 252 IPR011016 GO:0008270
Viun3g01311 312 SMART ringv_2 181 246 IPR011016 GO:0008270
Viun3g01311 312 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 168 257 IPR013083 -
Viun3g01311 312 Pfam RING-variant domain 205 245 IPR011016 GO:0008270
Viun3g01311 312 SUPERFAMILY RING/U-box 180 248 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g01311 Viun-Chr3 8274234 8278180 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g01311 162 311 C3H Transcription Factor Family AT5G05830 36.709 5.52e-27 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g01311 - - gmx:100791129 535.798
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g01311 3 8274234 8278180 Viun3g01311 3 8274234 8278180 ECH