Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g01290 ATGGCTTCAGCGGCTATATTTTCGTCGCTTCGGCGGCGCCGGTCGCCTTCGCTGGAGGCGTTTCTTGTGCCGGTTGACCTCTCTGAGGTGGCGCTTCTGGAGACACTTATCTCCGTCTCCGGAGACGTCGTATCCTGCTTCTCCGACAACCGGTTCCCCTTCCAGCGCCGGAACTCGCGTGCCCTCGTGGGAAAAGTGGAGATTTTCCGGTCAATGTTGGAGTGCTTGAGAGACTCCGCCGACGGTGGTGTTCTAAACCCCACGGCGGCGCTGTGCCTAAAGGAGCTTTATTTGCTACTGTACCGCTCTAAGATTCTTCTTGATTACTGTGCCCGATCGAGCAAGCTGTGGCTCTTGCTGCAGAACCATTGTGTGTCTGGTCACTTCCATGATTTGAGTCAAGAATTTTCGACCCTTTTGGATGTTTTTCCCGTTGGAGAGATTGGACTCAGTGATGACGTTAGGGAACAGGCTGAGTTGTTGCGGAGACAGTCCAAAAGGGCTAAGTTGTTCATAGATAAGAAGGATGACGCCCTTAGGACAAGGTTCTATTGGTTTCTGGATGAATTTGAAAGTGGGAGGGTTCCTGATTCTAAGGACTTGAGGTGTTTCTTTGTGGATAAGTTGCAGATGCTCGATGCTAAGAGTTGTAGGGTGGAGGTTGAGGCCTTGGAGGAGCAGATTGTGAACCACGAGGGTGATGTTGAGCCAACAGTTCCTGTGCTTAACGGGATGGTGGCTATCACAAGGTATTGTAGGTTTTTGTTATTTGGGTTTGAGGAAGAATTCGAAATTGAAATTCAGAAGAGGGCGAGGAAGAGGTTGATTACTCAGGAAATTGCAGAAACGTTTTTTACTGTTCCTAAGGATTTTTGCTGTCCGATAACTTTGGACTTGATGTGTGATCCTGTAATAATTTCTACTGGTCAAACTTATGATAGGAGGTCTATATGGAGGTGGATGGAGGAAGGACATTGCACTTGTCCCAAAACTGGGATATTGCTTTCTCATAACAGGCTTGTTCCTAATCGTGCTCTTAGGAATTTGATCATGCAGTGGTGCAGCGCACATGGAGTACCCTATGATCCACCTGAGGGGGTTGATCCATCAGTTGAGATGTTTGCATCAGCTTGTCCCTCCAAAGCTTCCCTTGTAGCTAACCGAGAGACGGCGATGCTTCTCATTCAGCAGCTTGCCGATGGGTCGCAAGTTGCAAAGACTGTGGCTGCCAAGGAGATAAGATTGCTGGCGAAAAATGGAAAGGAAAACCGTGCCTTCATTGCGCAAGCAGGGGCAATTCCTCATCTGAGGAAGTTGCTTTCCTCGCCCAATGCTGTTGCACAGGAGAATTCTGTGACTGCACTGCTCAATCTGTCCATTTTTGAAAGAAATAAGAGTATGATCGTGGAGGAAGGGTGTCTGGGATCAATTGTTGAGGTGTTGCAATTCGGGCACACGACTGAGGCAAGGGAGAATGCTGCTGCAACCTTGTTCAGCCTCTCTGCTGTCCACGAGTATAAGAAACGAATTGCGGATAATGTGGGGGCTGTTGAAGCATTGGCATGGTTGTTGCAAGAGGGAACTCAAAGAGGGAAGAAGGATGCTGTGACAGCATTATTTAATCTCTCCACCCATACCGAGAATTGTTTGAGAATGATAGAGGCAGGGGCAGTGAAAGCTATGGTCTTGGCTCTGGGGAATGAGGGAGTTTCCGAGGAAGCAGCTGGTGCCTTGGCCTTGATTGTTCGGCAGCCTGTTGGCGCCATGGCAGTGGTGAGGGAGGAAGCAGCAGTAGGTGGATTGATAGGGATTATGCGATGTGGAACGCCAAGAGGTAAAGAGAATGCAGTTGCAGCATTGCTGGAGCTCTGCAGGAGTGGCGGCGCCACCGCAACTGAGAGGGTGGTTAGGGCGCCTGCGTTGGCCGGCTTGCTTCAAACCTTGCTTTTTACAGGGACAAAGAGGGCAAGAAGAAAGGCAGCTTCACTTGCTAGAGTGTTTCAGAGATGTGAAAATGCATCTCTGCATTATGGTGGATTGGGTGTGGGTTATGCATTTGCTAGTGATTCAGCTTCAACCAGGAATACTACAAACTTTGTGAGTGATGTTTCACTTCCAATGTCCATTTCTGTTCCCGTTTTATAA 2145 0.489 MASAAIFSSLRRRRSPSLEAFLVPVDLSEVALLETLISVSGDVVSCFSDNRFPFQRRNSRALVGKVEIFRSMLECLRDSADGGVLNPTAALCLKELYLLLYRSKILLDYCARSSKLWLLLQNHCVSGHFHDLSQEFSTLLDVFPVGEIGLSDDVREQAELLRRQSKRAKLFIDKKDDALRTRFYWFLDEFESGRVPDSKDLRCFFVDKLQMLDAKSCRVEVEALEEQIVNHEGDVEPTVPVLNGMVAITRYCRFLLFGFEEEFEIEIQKRARKRLITQEIAETFFTVPKDFCCPITLDLMCDPVIISTGQTYDRRSIWRWMEEGHCTCPKTGILLSHNRLVPNRALRNLIMQWCSAHGVPYDPPEGVDPSVEMFASACPSKASLVANRETAMLLIQQLADGSQVAKTVAAKEIRLLAKNGKENRAFIAQAGAIPHLRKLLSSPNAVAQENSVTALLNLSIFERNKSMIVEEGCLGSIVEVLQFGHTTEARENAAATLFSLSAVHEYKKRIADNVGAVEALAWLLQEGTQRGKKDAVTALFNLSTHTENCLRMIEAGAVKAMVLALGNEGVSEEAAGALALIVRQPVGAMAVVREEAAVGGLIGIMRCGTPRGKENAVAALLELCRSGGATATERVVRAPALAGLLQTLLFTGTKRARRKAASLARVFQRCENASLHYGGLGVGYAFASDSASTRNTTNFVSDVSLPMSISVPVL 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g01290 714 Pfam Armadillo/beta-catenin-like repeat 421 459 IPR000225 GO:0005515
Viun3g01290 714 Coils Coil 214 234 - -
Viun3g01290 714 CDD RING-Ubox_PUB 288 340 IPR045210 -
Viun3g01290 714 SMART arm_5 420 460 IPR000225 GO:0005515
Viun3g01290 714 SMART arm_5 545 583 IPR000225 GO:0005515
Viun3g01290 714 SMART arm_5 504 544 IPR000225 GO:0005515
Viun3g01290 714 SMART arm_5 461 502 IPR000225 GO:0005515
Viun3g01290 714 Gene3D - 367 529 IPR011989 -
Viun3g01290 714 ProSiteProfiles U-box domain profile. 286 360 IPR003613 GO:0004842|GO:0016567
Viun3g01290 714 SUPERFAMILY ARM repeat 393 667 IPR016024 -
Viun3g01290 714 PANTHER U BOX DOMAIN-CONTAINING 59 670 - -
Viun3g01290 714 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 515 557 IPR000225 GO:0005515
Viun3g01290 714 Pfam U-box domain 287 357 IPR003613 GO:0004842|GO:0016567
Viun3g01290 714 SUPERFAMILY RING/U-box 276 361 - -
Viun3g01290 714 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 286 361 IPR013083 -
Viun3g01290 714 Gene3D - 530 664 IPR011989 -
Viun3g01290 714 FunFam RING-type E3 ubiquitin transferase 363 683 - -
Viun3g01290 714 SMART Ubox_2 290 353 IPR003613 GO:0004842|GO:0016567
Viun3g01290 714 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 431 473 IPR000225 GO:0005515
Viun3g01290 714 FunFam RING-type E3 ubiquitin transferase 270 365 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g01290 Viun-Chr3 8069057 8072120 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g01290 1 714 U-box Gene Family AT1G29340 67.619 0.0 901
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g01290 - - gmx:100797462 1262.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g01290 3 8069057 8072120 Viun3g01290 3 8069057 8072120 ECH
Viun3g01290 3 8069057 8072120 Viun6g02603 6 30569449 30572255 PCT