Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g01287 ATGGATGAGGCACTGGGTAGTTCATGTTCCCTGCCCCCTTTCCTGGTGAAGACTTATGAGATGGTGGATGATCCTTCCACGAATTCAGTTGTTTCGTGGAGTGCCTCTAGTAAAAGTTTCGTTGTGTGGAATCCTCCAGAATTTGCAAGGGATTTGCTGCCTAGATTCTTTAAGCACAACAACTTCTCAAGTTTCATCAGGCAGCTCAACACATATGGATTTAGAAAAATTGATCCGGAACAATGGGAATTTGCCAATGATGATTTTGTAAGAGGGCAACCTCATCTTATGAAGAACATTCATAGACGGAAGCCGGTTCATAGCCATTCTTTGCAGAATCTCCAAGCACAGGGTCCATTAGGGGAATCAGAAAGGCAGAGTTTTACTAATGAAATAGAGAAGCTTAAACATGATAAAGAGCGACTTCTAGCCGAATTGCAGAAATTTCAGCATGAGTGGCAGACATATGAGATACAAGTACATTGCTCGAACGATAGGTTGGAAAAGTTAGAACAAAAGCAACACAGGATGGTTTCTTCGGTTTCTCATGTATTGCAGAAACCTGTGATTGCTGTAAATATCTTGCCTCTGACAGAAACTATGGATAGAAAACGAAGGTTGCCGAGAAGTGGCCACTACTATGAAGAAGCTAGTATTGAAGATGCTATTGAAACCGCTCAAATGTTACCAAGAGAAAATGCAGATAATAGCACTGTCTTGACATTGAATGTGGAGCGATTGGATCAGCTTGAATCATCCGTAGCATTTTGGGAGGCTATTGCACATGATATTGGCGACAACTTCGCTCAAATTCAGTCAAACATGGATGTTGATGAATCTACAAGTTGTGCTGATAGTCCATCCATATCTTGTGCGCAATTAGATGTTGAAATTCGGGCTAAATCATCTGGAATTGATATGAATTCCGAGCCAACTGTAGCTGCTGTTCCAGATCCAGTTGCATCAAAAGATCAACCTGCAGGAATCACTGTCGCAGCGACTGGAGTGAATGATGTATTCTGGGAACAGTTCTTGACAGAGGATCCTGGTGCATCAGAAACACAGGAAGTGCAGTCAGAAAGAAAGGATTCTGATGGCAGAAAGAATGAAGGAAAACCTAATGACCTTAGCAAATTTTGGTGGAATATACGGAATGCGAATAATCACTCAGAACCGATGGGGCATGTTGGTCAAGCAGAGAAAACTTAG 1209 0.4194 MDEALGSSCSLPPFLVKTYEMVDDPSTNSVVSWSASSKSFVVWNPPEFARDLLPRFFKHNNFSSFIRQLNTYGFRKIDPEQWEFANDDFVRGQPHLMKNIHRRKPVHSHSLQNLQAQGPLGESERQSFTNEIEKLKHDKERLLAELQKFQHEWQTYEIQVHCSNDRLEKLEQKQHRMVSSVSHVLQKPVIAVNILPLTETMDRKRRLPRSGHYYEEASIEDAIETAQMLPRENADNSTVLTLNVERLDQLESSVAFWEAIAHDIGDNFAQIQSNMDVDESTSCADSPSISCAQLDVEIRAKSSGIDMNSEPTVAAVPDPVASKDQPAGITVAATGVNDVFWEQFLTEDPGASETQEVQSERKDSDGRKNEGKPNDLSKFWWNIRNANNHSEPMGHVGQAEKT 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g01287 402 PRINTS Heat shock factor (HSF) domain signature 14 37 IPR000232 GO:0003700|GO:0006355|GO:0043565
Viun3g01287 402 PRINTS Heat shock factor (HSF) domain signature 65 77 IPR000232 GO:0003700|GO:0006355|GO:0043565
Viun3g01287 402 PRINTS Heat shock factor (HSF) domain signature 52 64 IPR000232 GO:0003700|GO:0006355|GO:0043565
Viun3g01287 402 SMART hsfneu3 10 103 IPR000232 GO:0003700|GO:0006355|GO:0043565
Viun3g01287 402 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 7 230 IPR027725 -
Viun3g01287 402 ProSitePatterns HSF-type DNA-binding domain signature. 53 77 IPR000232 GO:0003700|GO:0006355|GO:0043565
Viun3g01287 402 FunFam Heat shock transcription factor 1 7 104 - -
Viun3g01287 402 Gene3D - 7 104 IPR036388 -
Viun3g01287 402 MobiDBLite consensus disorder prediction 354 374 - -
Viun3g01287 402 SUPERFAMILY "Winged helix" DNA-binding domain 10 103 IPR036390 -
Viun3g01287 402 Pfam HSF-type DNA-binding 14 103 IPR000232 GO:0003700|GO:0006355|GO:0043565
Viun3g01287 402 MobiDBLite consensus disorder prediction 346 378 - -
Viun3g01287 402 Coils Coil 125 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g01287 Viun-Chr3 8038591 8040844 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g01287 7 402 HSF AT4G18880 52.683 1.68e-124 364
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Viun3g01287 HSF_DNA-bind 2.2e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g01287 K09419 - gmx:100798004 724.931
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g01287 3 8038591 8040844 Viun3g01287 3 8038591 8040844 ECH
Viun6g02601 6 30550807 30552846 Viun3g01287 3 8038591 8040844 ECH
Viun3g01287 3 8038591 8040844 Viun6g02601 6 30550807 30552846 PCT