Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g01284 ATGGACGAGAATTCAACAACAAACCACGAGGTGGTCTTAGATGTAAACAAGGATGTCTCTACAACAACTGAAGACTCAAACTCCTGTCTCAATGTTTTTTTCTTGCAAAAGTTGGTGGCTGAGGTGGTGGGCACGTATTTCTTGATATTCGCAGGGTGTGCTTCGGTGGTTGTGAACAAGAACAACGACGACGTGGTAACACTTCCTGGGATATCAATTGTTTGGGGACTAGTTGTGATGGTGCTGGCTTACTCTGTTGGTCACATCTCTGGTGCTCATTTCAATCCTGCTGTCACCATTGCCTTTGCCTCCACCAAAAGGTTTCCATGGAAGCAGGTGCCAATTTATGTAGTAGCACAGGTTGTTGGATCTACACTTGCAAGTGGGAGTCTCAGACTAATATTCAGTGGTCATGAGAACCAGTTTCCAGGAACACTTCCAGCGGGCACTTACGCCCAGGCATTTGCGGTTGAATTCATTATCACGTTTTTGCTTATGTTTGTCATATCTGGGGTTGCCACTGATAACAGAGCGATCGGTGAGTTGGCTGGGATTGCCGTTGGGGCCACTGTACTGTTGAATGTGTTGTTTGCAGGACCAATCACAGGAGCATCAATGAACCCAGCAAGAAGCTTAGGCCCTGCATTAGTGCACAATGAATTCAGAGGAATATGGATATATTTAGTGTCTCCAACAATTGGGGCTGTGTTTGGTGCATGGGTGTATAACAGTATTCGTTACACAGATAAGCCACTGCGTGAGATCACCCAAAGTGCTTCTTTCGTTAAAGGAAAAGGTGATAGATGA 807 0.4548 MDENSTTNHEVVLDVNKDVSTTTEDSNSCLNVFFLQKLVAEVVGTYFLIFAGCASVVVNKNNDDVVTLPGISIVWGLVVMVLAYSVGHISGAHFNPAVTIAFASTKRFPWKQVPIYVVAQVVGSTLASGSLRLIFSGHENQFPGTLPAGTYAQAFAVEFIITFLLMFVISGVATDNRAIGELAGIAVGATVLLNVLFAGPITGASMNPARSLGPALVHNEFRGIWIYLVSPTIGAVFGAWVYNSIRYTDKPLREITQSASFVKGKGDR 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g01284 268 Pfam Major intrinsic protein 32 242 IPR000425 GO:0015267|GO:0016020|GO:0055085
Viun3g01284 268 SUPERFAMILY Aquaporin-like 32 256 IPR023271 -
Viun3g01284 268 Gene3D Glycerol uptake facilitator protein. 1 258 IPR023271 -
Viun3g01284 268 CDD MIP 36 243 IPR000425 GO:0015267|GO:0016020|GO:0055085
Viun3g01284 268 NCBIfam MIP family channel protein 40 242 IPR000425 GO:0015267|GO:0016020|GO:0055085
Viun3g01284 268 ProSitePatterns MIP family signature. 93 101 IPR022357 -
Viun3g01284 268 PRINTS Major intrinsic protein family signature 157 175 IPR000425 GO:0015267|GO:0016020|GO:0055085
Viun3g01284 268 PRINTS Major intrinsic protein family signature 36 55 IPR000425 GO:0015267|GO:0016020|GO:0055085
Viun3g01284 268 PRINTS Major intrinsic protein family signature 75 99 IPR000425 GO:0015267|GO:0016020|GO:0055085
Viun3g01284 268 PRINTS Major intrinsic protein family signature 188 210 IPR000425 GO:0015267|GO:0016020|GO:0055085
Viun3g01284 268 PRINTS Major intrinsic protein family signature 225 245 IPR000425 GO:0015267|GO:0016020|GO:0055085
Viun3g01284 268 PRINTS Major intrinsic protein family signature 112 131 IPR000425 GO:0015267|GO:0016020|GO:0055085
Viun3g01284 268 PANTHER AQUAPORIN NIP2-1 20 261 IPR034294 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g01284 Viun-Chr3 8004343 8006684 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g01284 14 263 Major Intrinsic Protein MIP AT5G37810 59.127 2.41e-104 303
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g01284 K09874 - gmx:100798526 446.047
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g01284 3 8004343 8006684 Viun3g01284 3 8004343 8006684 ECH
Viun3g01284 3 8004343 8006684 Viun6g02593 6 30488384 30490961 PCT