Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g01281 ATGCTACCTAGGATACTCTTTGCTTTCTTACTCTTTACTCTGAGTTGTTTTCGATGGCTAGAATATGCAGAATGCAAAGTGCCCCAACAGGAGGTTGATGCTCTTAAGGAAATCACTAGCACGATGGGGGCCACCAATTGGGAGTTTGATAGTGATGATGATTGTCCTAAAATTCTAAGATCAACACCAGATCCACCTAAAGAATCTGAAAGGACAATTGCTTGTGATTGCTCTATTGAAAACAACACCTGTCACGTAGTAGAGATCGTTTTCAAGAAGGTCAACCTTCCTGGCAAGCTTCCACCTCAATTGGTTAAGCTTTTTCCTTACCTCAGAAAAGTTGATTTTGCTTTTAACTACCTAAGTGGTACGATTCCAAAGGAATGGGGTTCAGAATATCTAACTTCAATCTCTGTATATGCTAATAATCTGTCAGGGGAAATTCCTATAGAGTTGGGAGGAATTATCAATCTAACATACTTGAACCTTGAAGCAAACCAATTTTCTGGTGTTGTTCCCCCTGATCTTGGAAATCTAACTAAGCTGGAAGCATTGATTTTATCGTCCAATAAATTGTCTGGGAAGTTACCGGTGACCCTTGCTAAGTTGCAGAATATGAAAGAATTCAGGATAAGTGACAACAATTTTAGCGGAGAAATACCTAGCTTCTTCACACAGAATTGGACATCACTTCAAAGATTAGACATGCTTGCAAGTGGAATGGAGGGACCTATACCATCAAACATATCTCTTTTGAGTACTTTACATCAATTGAGGATTAGTGACATAAATGGTCCAAGTCAGGATTTTCCTAATTTAAGCAACATGAGAGGAATGAAGACACTGATTTTGAGAAACTGCCATATTACTGGAGAGCTTCCTAGCTACTTGTGGAGTATGGACTTGGAGATGTTGGACGTGAGTTTCAATAAGTTGGTTGGGAAAATACCAGATACACGACATACAGGGCATCTGAAATTTCTCTTCCTAACTCACAACATGCTAAGTGGTAATATTCCCAAATCAGTCTTGATGGATGGAAGCAGCGTTGACCTTTCTTACAACAATTTTACATGGAAAGGACCAGATGAACATGCTTGTAGAGAGGACCTAAATTTAAACTTAAACTTGTTCCGGAGCTTCTTCGGGACCAAATTACGGCAGATTCTTCCATGTAAAGAGATCTCCAATTGTCCTGCATATTCACGTTGTTTTCATCTTAATTGTGGTGGAAAGGATGTGAAGGTGATGGAAAATGATGAAAATGTTCTCTATGTAGGAGATGGAGATGTGTTAGGTAGTGAAGCTGCTAAATATTGTATTAATTATGAAGGTCACTGGGGATATAGCAGCACTGGGGACTTCATGGATGATGGCATTTACCTAAATACTCGTTTTACTAGGACTTTGACATCTTCAAATTTGCCTGAATTATATCAAACGGCACGTGTTACTCCACTTTCGCTTACTTATTTTCTCTATTGCTTGGAAAATGGGAAATATACTGTAAAACTCCACTTCGCAGAAATACAATTTACAAACGATAAGACATATAGCAGTCTTGGGAAGCGCTTATTTGATATCTATATTCAGGAAAAACTAGTTAGGAAGGATTTTAATATTGAAGATGAAATTCATGGTGCTCAAAAACCACTTATTTTCCCATATAATGTCAGTGTAACAGACAATATTCTGGAGATTCGATTCTATTGGGCTGGAAAGGGGACTACAAGGATTCCTGGTGGTGGAGCTTATGGTCCCCTCATATCAGCACTCTCCATTGTTTCTCATTCTAAACCTTGTTCTGAACCAAAAAGTGCAAGGCGTAGGATAATTGTTGGAGTTGGGTTTGGTGTTACCGCTCTGTGCCTTGCCATCATCATTGTTGGAATCTTATGGTGGAATGGCTGCTTCAAAGGAATGATTAGGGAAGTAAAAGGTACTGAAAGACATGATTCTAAAATGGGGACATTTACATTAGAACAAATTAGAGAGGCCACGGAGGACTTTAGTCCAGTTAACAAGATTGGAGAAGGTGGTTTTGGTCCTGTCTACAAGGGTCAATTATCTGATGGTACACTGGTAGCAGTCAAACAACTCTCATCAAAGTCACGGCAGGGAAATCGTGAATTTTTAAACGAGATAGGCTTGATATCTTGTTTGCAGCACCCTAATCTTGTGAAACTCCATGGATGTTGCATTGAAGGGGATGAATTAATGTTGGTGTATGAGTACATGGAAAATAATAGCCTGGCTCAAGCTTTGTTCGGCTCAAAAGATGAACTTAAACTTGATTGGCCAACAAGGCTTAGGATCTGTATTGGCATAGCAAAAGGTCTTGCATTTCTTCATGAAGAATCAAGACTCAAGATTGTTCATCGAGACATCAAGGCTAATAATGTGTTACTGGATGGGAATTTAAACCCCAAAATATCTGACTTTGGGTTGGCTAGGCTTGATGACGAAGAGAAGACCCATATCACCACCCGAATAGCTGGGACAATAGGGTACATGGCACCGGAATATGCATTATGGGGTCACTTGTCTTACAAGGCTGATGTTTACAGTTATGGAGTTGTGGTCTTGGAAGTTGTTAGTGGGAAGAGCAATAAGAACTACATCCCTAGTGATAATCATGTTTGCCTTTTAGACAAGGCATGTCATCTACAGCGTAGAGAAAGCTTAATAGAACTTGTGGATGAAAGGTTGGGATCAGAGGTAAAACCAACAGAAGCAATAATTTTGATGAAAGTTGCTCTTCTGTGTACCGATGTATCACCTTCGCTTAGGCCTACAATGTCTGAGGTTGTAAACATGCTGGAAGGAAGAGCAAGCATTCCAGATGCTATCCCACAGTCAAGTGATTTTAGTGAAGATATAAGGTTTAAATCCATGAGGGATATCTATCAGCAAAGGGAAAACCACAGTTTAAGTTCAAGCCAGTTAGACAATTCAACAGGAGTTCTCACACTTTCCTCGTCCTAA 2985 0.3963 MLPRILFAFLLFTLSCFRWLEYAECKVPQQEVDALKEITSTMGATNWEFDSDDDCPKILRSTPDPPKESERTIACDCSIENNTCHVVEIVFKKVNLPGKLPPQLVKLFPYLRKVDFAFNYLSGTIPKEWGSEYLTSISVYANNLSGEIPIELGGIINLTYLNLEANQFSGVVPPDLGNLTKLEALILSSNKLSGKLPVTLAKLQNMKEFRISDNNFSGEIPSFFTQNWTSLQRLDMLASGMEGPIPSNISLLSTLHQLRISDINGPSQDFPNLSNMRGMKTLILRNCHITGELPSYLWSMDLEMLDVSFNKLVGKIPDTRHTGHLKFLFLTHNMLSGNIPKSVLMDGSSVDLSYNNFTWKGPDEHACREDLNLNLNLFRSFFGTKLRQILPCKEISNCPAYSRCFHLNCGGKDVKVMENDENVLYVGDGDVLGSEAAKYCINYEGHWGYSSTGDFMDDGIYLNTRFTRTLTSSNLPELYQTARVTPLSLTYFLYCLENGKYTVKLHFAEIQFTNDKTYSSLGKRLFDIYIQEKLVRKDFNIEDEIHGAQKPLIFPYNVSVTDNILEIRFYWAGKGTTRIPGGGAYGPLISALSIVSHSKPCSEPKSARRRIIVGVGFGVTALCLAIIIVGILWWNGCFKGMIREVKGTERHDSKMGTFTLEQIREATEDFSPVNKIGEGGFGPVYKGQLSDGTLVAVKQLSSKSRQGNREFLNEIGLISCLQHPNLVKLHGCCIEGDELMLVYEYMENNSLAQALFGSKDELKLDWPTRLRICIGIAKGLAFLHEESRLKIVHRDIKANNVLLDGNLNPKISDFGLARLDDEEKTHITTRIAGTIGYMAPEYALWGHLSYKADVYSYGVVVLEVVSGKSNKNYIPSDNHVCLLDKACHLQRRESLIELVDERLGSEVKPTEAIILMKVALLCTDVSPSLRPTMSEVVNMLEGRASIPDAIPQSSDFSEDIRFKSMRDIYQQRENHSLSSSQLDNSTGVLTLSSS 994
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g01281 994 Gene3D - 402 599 - -
Viun3g01281 994 Gene3D Transferase(Phosphotransferase) domain 1 746 954 - -
Viun3g01281 994 FunFam Putative LRR receptor-like serine/threonine-protein kinase isoform A 197 264 - -
Viun3g01281 994 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 10 976 - -
Viun3g01281 994 FunFam Probable LRR receptor-like serine/threonine-protein kinase RFK1 33 196 - -
Viun3g01281 994 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 640 745 - -
Viun3g01281 994 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 16 - -
Viun3g01281 994 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 402 597 - -
Viun3g01281 994 Pfam Protein tyrosine and serine/threonine kinase 674 940 IPR001245 GO:0004672|GO:0006468
Viun3g01281 994 Gene3D Phosphorylase Kinase; domain 1 639 745 - -
Viun3g01281 994 ProSiteProfiles Protein kinase domain profile. 670 946 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g01281 994 CDD STKc_IRAK 676 942 - -
Viun3g01281 994 SUPERFAMILY Protein kinase-like (PK-like) 654 941 IPR011009 -
Viun3g01281 994 SUPERFAMILY L domain-like 84 383 - -
Viun3g01281 994 SMART serkin_6 670 940 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g01281 994 Gene3D Ribonuclease Inhibitor 56 195 IPR032675 -
Viun3g01281 994 ProSitePatterns Serine/Threonine protein kinases active-site signature. 791 803 IPR008271 GO:0004672|GO:0006468
Viun3g01281 994 Pfam Malectin domain 404 592 IPR021720 -
Viun3g01281 994 FunFam Putative LRR receptor-like serine/threonine-protein kinase 746 952 - -
Viun3g01281 994 MobiDBLite consensus disorder prediction 973 994 - -
Viun3g01281 994 Gene3D Ribonuclease Inhibitor 267 372 IPR032675 -
Viun3g01281 994 Gene3D Ribonuclease Inhibitor 196 266 IPR032675 -
Viun3g01281 994 FunFam Probable LRR receptor-like serine/threonine-protein kinase RFK1 266 385 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g01281 Viun-Chr3 7979811 7990699 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g01281 6 835 Receptor kinase-like Gene Family AT1G29750 58.134 0.0 971
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Viun3g01281 PK_Tyr_Ser-Thr 6.7e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g01281 - - mtr:11406167 1394.02