Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g01280 ATGCTACCTAGGATACTCTTTGCTTTCTTACTCTTTACTCTGAGTTGTTTTCGATGGCTAGAATATGCAGAATGCAAAGTGCCCCAACAGGAGGTTGATGCTCTTAAGGAAATCACTAGCACGATGGGGGCCACCAATTGGGAGTTTGATAGTGATGATGATTGTCCTAAAATTCTAAGATCAACACCAGATCCACCTAAAGAATCTGAAAGGACAATTGCTTGTGATTGCTCTATTGAAAACAACACCTGTCACGTAGTAGAGATCGTTTTCAAGAAGGTCAACCTTCCTGGCAAGCTTCCACCTCAATTGGTTAAGCTTTTTCCTTACCTCAGAAAAGTTGATTTTGCTTTTAACTACCTAAGTGGTACGATTCCAAAGGAATGGGGTTCAGAATATCTAACTTCAATCTCTGTATATGCTAATAATCTGTCAGGGGAAATTCCTATAGAGTTGGGAGGAATTATCAATCTAACATACTTGAACCTTGAAGCAAACCAATTTTCTGGTGTTGTTCCCCCTGATCTTGGAAATCTAACTAAGCTGGAAGCATTGATTTTATCGTCCAATAAATTGTCTGGGAAGTTACCGGTGACCCTTGCTAAGTTGCAGAATATGAAAGAATTCAGGATAAGTGACAACAATTTTAGCGGAGAAATACCTAGCTTCTTCACACAGAATTGGACATCACTTCAAAGATTAGACATGCTTGCAAGTGGAATGGAGGGACCTATACCATCAAACATATCTCTTTTGAGTACTTTACATCAATTGAGGATTAGTGACATAAATGGTCCAAGTCAGGATTTTCCTAATTTAAGCAACATGAGAGGAATGAAGACACTGATTTTGAGAAACTGCCATATTACTGGAGAGCTTCCTAGCTACTTGTGGAGTATGGACTTGGAGATGTTGGACGTGAGTTTCAATAAGTTGGTTGGGAAAATACCAGATACACGACATACAGGGCATCTGAAATTTCTCTTCCTAACTCACAACATGCTAAGTGGTAATATTCCCAAATCAGTCTTGATGGATGGAAGCAGCGTAAATTTAAACTTAAACTTGTTCCGGAGCTTCTTCGGGACCAAATTACGGCAGATTCTTCCATGTAAAGAGATCTCCAATTGTCCTGCATATTCACGTTGTTTTCATCTTAATTGTGGTGGAAAGGATGTGAAGGTGATGGAAAATGATGAAAATGTTCTCTATGTAGGAGATGGAGATGTGTTAGGTAGTGAAGCTGCTAAATATTGTATTAATTATGAAGGTCACTGGGGATATAGCAGCACTGGGGACTTCATGGATGATGGCATTTACCTAAATACTCGTTTTACTAGGACTTTGACATCTTCAAATTTGCCTGAATTATATCAAACGGCACGTGTTACTCCACTTTCGCTTACTTATTTTCTCTATTGCTTGGAAAATGGGAAATATACTGTAAAACTCCACTTCGCAGAAATACAATTTACAAACGATAAGACATATAGCAGTCTTGGGAAGCGCTTATTTGATATCTATATTCAGGAAAAACTAGTTAGGAAGGATTTTAATATTGAAGATGAAATTCATGGTGCTCAAAAACCACTTATTTTCCCATATAATGTCAGTGTAACAGACAATATTCTGGAGATTCGATTCTATTGGGCTGGAAAGGGGACTACAAGGATTCCTGGTGGTGGAGCTTATGGTCCCCTCATATCAGCACTCTCCATTGTTTCTCATTCTAAACCTTGTTCTGAACCAAAAAGTGCAAGGCGTAGGATAATTGTTGGAGTTGGGTTTGGTGTTACCGCTCTGTGCCTTGCCATCATCATTGTTGGAATCTTATGGTGGAATGGCTGCTTCAAAGGAATGATTAGGGAAGTAAAAGGTACTGAAAGACATGATTCTAAAATGGGGACATTTACATTAGAACAAATTAGAGAGGCCACGGAGGACTTTAGTCCAGTTAACAAGATTGGAGAAGGTGGTTTTGGTCCTGTCTACAAGGGTCAATTATCTGATGGTACACTGGTAGCAGTCAAACAACTCTCATCAAAGTCACGGCAGGGAAATCGTGAATTTTTAAACGAGATAGGCTTGATATCTTGTTTGCAGCACCCTAATCTTGTGAAACTCCATGGATGTTGCATTGAAGGGGATGAATTAATGTTGGTGTATGAGTACATGGAAAATAATAGCCTGGCTCAAGCTTTGTTCGGCTCAAAAGATGAACTTAAACTTGATTGGCCAACAAGGCTTAGGATCTGTATTGGCATAGCAAAAGGTCTTGCATTTCTTCATGAAGAATCAAGACTCAAGATTGTTCATCGAGACATCAAGGCTAATAATGTGTTACTGGATGGGAATTTAAACCCCAAAATATCTGACTTTGGGTTGGCTAGGCTTGATGACGAAGAGAAGACCCATATCACCACCCGAATAGCTGGGACAATAGGGTACATGGCACCGGAATATGCATTATGGGGTCACTTGTCTTACAAGGCTGATGTTTACAGTTATGGAGTTGTGGTCTTGGAAGTTGTTAGTGGGAAGAGCAATAAGAACTACATCCCTAGTGATAATCATGTTTGCCTTTTAGACAAGGCATGTCATCTACAGCGTAGAGAAAGCTTAATAGAACTTGTGGATGAAAGGTTGGGATCAGAGGTAAAACCAACAGAAGCAATAATTTTGATGAAAGTTGCTCTTCTGTGTACCGATGTATCACCTTCGCTTAGGCCTACAATGTCTGAGGTTGTAAACATGCTGGAAGGAAGAGCAAGCATTCCAGATGCTATCCCACAGTCAAGTGATTTTAGTGAAGATATAAGGTTTAAATCCATGAGGGATATCTATCAGCAAAGGGAAAACCACAGTTTAAGTTCAAGCCAGTTAGACAATTCAACAGGAGTTCTCACACTTTCCTCGTCCTAA 2922 0.3963 MLPRILFAFLLFTLSCFRWLEYAECKVPQQEVDALKEITSTMGATNWEFDSDDDCPKILRSTPDPPKESERTIACDCSIENNTCHVVEIVFKKVNLPGKLPPQLVKLFPYLRKVDFAFNYLSGTIPKEWGSEYLTSISVYANNLSGEIPIELGGIINLTYLNLEANQFSGVVPPDLGNLTKLEALILSSNKLSGKLPVTLAKLQNMKEFRISDNNFSGEIPSFFTQNWTSLQRLDMLASGMEGPIPSNISLLSTLHQLRISDINGPSQDFPNLSNMRGMKTLILRNCHITGELPSYLWSMDLEMLDVSFNKLVGKIPDTRHTGHLKFLFLTHNMLSGNIPKSVLMDGSSVNLNLNLFRSFFGTKLRQILPCKEISNCPAYSRCFHLNCGGKDVKVMENDENVLYVGDGDVLGSEAAKYCINYEGHWGYSSTGDFMDDGIYLNTRFTRTLTSSNLPELYQTARVTPLSLTYFLYCLENGKYTVKLHFAEIQFTNDKTYSSLGKRLFDIYIQEKLVRKDFNIEDEIHGAQKPLIFPYNVSVTDNILEIRFYWAGKGTTRIPGGGAYGPLISALSIVSHSKPCSEPKSARRRIIVGVGFGVTALCLAIIIVGILWWNGCFKGMIREVKGTERHDSKMGTFTLEQIREATEDFSPVNKIGEGGFGPVYKGQLSDGTLVAVKQLSSKSRQGNREFLNEIGLISCLQHPNLVKLHGCCIEGDELMLVYEYMENNSLAQALFGSKDELKLDWPTRLRICIGIAKGLAFLHEESRLKIVHRDIKANNVLLDGNLNPKISDFGLARLDDEEKTHITTRIAGTIGYMAPEYALWGHLSYKADVYSYGVVVLEVVSGKSNKNYIPSDNHVCLLDKACHLQRRESLIELVDERLGSEVKPTEAIILMKVALLCTDVSPSLRPTMSEVVNMLEGRASIPDAIPQSSDFSEDIRFKSMRDIYQQRENHSLSSSQLDNSTGVLTLSSS 973
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g01280 973 FunFam Putative LRR receptor-like serine/threonine-protein kinase isoform A 197 264 - -
Viun3g01280 973 SUPERFAMILY Protein kinase-like (PK-like) 633 920 IPR011009 -
Viun3g01280 973 Pfam Protein tyrosine and serine/threonine kinase 653 919 IPR001245 GO:0004672|GO:0006468
Viun3g01280 973 CDD STKc_IRAK 655 921 - -
Viun3g01280 973 Gene3D Ribonuclease Inhibitor 196 263 IPR032675 -
Viun3g01280 973 ProSitePatterns Serine/Threonine protein kinases active-site signature. 770 782 IPR008271 GO:0004672|GO:0006468
Viun3g01280 973 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 16 - -
Viun3g01280 973 Pfam Malectin domain 383 571 IPR021720 -
Viun3g01280 973 Gene3D Ribonuclease Inhibitor 264 364 IPR032675 -
Viun3g01280 973 Gene3D Ribonuclease Inhibitor 45 195 IPR032675 -
Viun3g01280 973 Gene3D - 381 578 - -
Viun3g01280 973 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 619 724 - -
Viun3g01280 973 MobiDBLite consensus disorder prediction 952 973 - -
Viun3g01280 973 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 381 576 - -
Viun3g01280 973 SMART serkin_6 649 919 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g01280 973 ProSiteProfiles Protein kinase domain profile. 649 925 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g01280 973 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 10 955 - -
Viun3g01280 973 FunFam Putative LRR receptor-like serine/threonine-protein kinase 725 931 - -
Viun3g01280 973 SUPERFAMILY L domain-like 71 341 - -
Viun3g01280 973 Gene3D Transferase(Phosphotransferase) domain 1 725 933 - -
Viun3g01280 973 FunFam Probable LRR receptor-like serine/threonine-protein kinase RFK1 33 196 - -
Viun3g01280 973 Gene3D Phosphorylase Kinase; domain 1 618 724 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g01280 Viun-Chr3 7979811 7990699 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g01280 6 814 Receptor kinase-like Gene Family AT1G29750 56.818 0.0 929
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Viun3g01280 PK_Tyr_Ser-Thr 6.4e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g01280 - - mtr:11406167 1357.43