Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g01279 ATGCTACCTAGGATACTCTTTGCTTTCTTACTCTTTACTCTGAGTTGTTTTCGATGGCTAGAATATGCAGAATGCAAAGTGCCCCAACAGGAGGTTGATGCTCTTAAGGAAATCACTAGCACGATGGGGGCCACCAATTGGGAGTTTGATAGTGATGATGATTGTCCTAAAATTCTAAGATCAACACCAGATCCACCTAAAGAATCTGAAAGGACAATTGCTTGTGATTGCTCTATTGAAAACAACACCTGTCACGTAGTAGAGATCGTTTTCAAGAAGGTCAACCTTCCTGGCAAGCTTCCACCTCAATTGGTTAAGCTTTTTCCTTACCTCAGAAAAGTTGATTTTGCTTTTAACTACCTAAGTGGTACGATTCCAAAGGAATGGGGTTCAGAATATCTAACTTCAATCTCTGTATATGCTAATAATCTGTCAGGGGAAATTCCTATAGAGTTGGGAGGAATTATCAATCTAACATACTTGAACCTTGAAGCAAACCAATTTTCTGGTGTTGTTCCCCCTGATCTTGGAAATCTAACTAAGCTGGAAGCATTGATTTTATCGTCCAATAAATTGTCTGGGAAGTTACCGGTGACCCTTGCTAAGTTGCAGAATATGAAAGAATTCAGGATAAGTGACAACAATTTTAGCGGAGAAATACCTAGCTTCTTCACACAGAATTGGACATCACTTCAAAGATTAGACATGCTTGCAAGTGGAATGGAGGGACCTATACCATCAAACATATCTCTTTTGAGTACTTTACATCAATTGAGGATTAGTGACATAAATGGTCCAAGTCAGGATTTTCCTAATTTAAGCAACATGAGAGGAATGAAGACACTGATTTTGAGAAACTGCCATATTACTGGAGAGCTTCCTAGCTACTTGTGGAGTATGGACTTGGAGATGTTGGACGTGAGTTTCAATAAGTTGGTTGGGAAAATACCAGATACACGACATACAGGGCATCTGAAATTTCTTGACCTTTCTTACAACAATTTTACATGGAAAGGACCAGATGAACATGCTTGTAGAGAGGACCTAAATTTAAACTTAAACTTGTTCCGGAGCTTCTTCGGGACCAAATTACGGCAGATTCTTCCATGTAAAGAGATCTCCAATTGTCCTGCATATTCACGTTGTTTTCATCTTAATTGTGGTGGAAAGGATGTGAAGGTGATGGAAAATGATGAAAATGTTCTCTATGTAGGAGATGGAGATGTGTTAGGTAGTGAAGCTGCTAAATATTGTATTAATTATGAAGGTCACTGGGGATATAGCAGCACTGGGGACTTCATGGATGATGGCATTTACCTAAATACTCGTTTTACTAGGACTTTGACATCTTCAAATTTGCCTGAATTATATCAAACGGCACGTGTTACTCCACTTTCGCTTACTTATTTTCTCTATTGCTTGGAAAATGGGAAATATACTGTAAAACTCCACTTCGCAGAAATACAATTTACAAACGATAAGACATATAGCAGTCTTGGGAAGCGCTTATTTGATATCTATATTCAGGAAAAACTAGTTAGGAAGGATTTTAATATTGAAGATGAAATTCATGGTGCTCAAAAACCACTTATTTTCCCATATAATGTCAGTGTAACAGACAATATTCTGGAGATTCGATTCTATTGGGCTGGAAAGGGGACTACAAGGATTCCTGGTGGTGGAGCTTATGGTCCCCTCATATCAGCACTCTCCATTGTTTCTCATTCTAAACCTTGTTCTGAACCAAAAAGTGCAAGGCGTAGGATAATTGTTGGAGTTGGGTTTGGTGTTACCGCTCTGTGCCTTGCCATCATCATTGTTGGAATCTTATGGTGGAATGGCTGCTTCAAAGGAATGATTAGGGAAGTAAAAGGTACTGAAAGACATGATTCTAAAATGGGGACATTTACATTAGAACAAATTAGAGAGGCCACGGAGGACTTTAGTCCAGTTAACAAGATTGGAGAAGGTGGTTTTGGTCCTGTCTACAAGGGTCAATTATCTGATGGTACACTGGTAGCAGTCAAACAACTCTCATCAAAGTCACGGCAGGGAAATCGTGAATTTTTAAACGAGATAGGCTTGATATCTTGTTTGCAGCACCCTAATCTTGTGAAACTCCATGGATGTTGCATTGAAGGGGATGAATTAATGTTGGTGTATGAGTACATGGAAAATAATAGCCTGGCTCAAGCTTTGTTCGGCTCAAAAGATGAACTTAAACTTGATTGGCCAACAAGGCTTAGGATCTGTATTGGCATAGCAAAAGGTCTTGCATTTCTTCATGAAGAATCAAGACTCAAGATTGTTCATCGAGACATCAAGGCTAATAATGTGTTACTGGATGGGAATTTAAACCCCAAAATATCTGACTTTGGGTTGGCTAGGCTTGATGACGAAGAGAAGACCCATATCACCACCCGAATAGCTGGGACAATAGGGTACATGGCACCGGAATATGCATTATGGGGTCACTTGTCTTACAAGGCTGATGTTTACAGTTATGGAGTTGTGGTCTTGGAAGTTGTTAGTGGGAAGAGCAATAAGAACTACATCCCTAGTGATAATCATGTTTGCCTTTTAGACAAGGCATGTCATCTACAGCGTAGAGAAAGCTTAATAGAACTTGTGGATGAAAGGTTGGGATCAGAGGTAAAACCAACAGAAGCAATAATTTTGATGAAAGTTGCTCTTCTGTGTACCGATGTATCACCTTCGCTTAGGCCTACAATGTCTGAGGTTGTAAACATGCTGGAAGGAAGAGCAAGCATTCCAGATGCTATCCCACAGTCAAGTGATTTTAGTGAAGATATAAGGTTTAAATCCATGAGGGATATCTATCAGCAAAGGGAAAACCACAGTTTAAGTTCAAGCCAGTTAGACAATTCAACAGGAGTTCTCACACTTTCCTCGTCCTAA 2919 0.3957 MLPRILFAFLLFTLSCFRWLEYAECKVPQQEVDALKEITSTMGATNWEFDSDDDCPKILRSTPDPPKESERTIACDCSIENNTCHVVEIVFKKVNLPGKLPPQLVKLFPYLRKVDFAFNYLSGTIPKEWGSEYLTSISVYANNLSGEIPIELGGIINLTYLNLEANQFSGVVPPDLGNLTKLEALILSSNKLSGKLPVTLAKLQNMKEFRISDNNFSGEIPSFFTQNWTSLQRLDMLASGMEGPIPSNISLLSTLHQLRISDINGPSQDFPNLSNMRGMKTLILRNCHITGELPSYLWSMDLEMLDVSFNKLVGKIPDTRHTGHLKFLDLSYNNFTWKGPDEHACREDLNLNLNLFRSFFGTKLRQILPCKEISNCPAYSRCFHLNCGGKDVKVMENDENVLYVGDGDVLGSEAAKYCINYEGHWGYSSTGDFMDDGIYLNTRFTRTLTSSNLPELYQTARVTPLSLTYFLYCLENGKYTVKLHFAEIQFTNDKTYSSLGKRLFDIYIQEKLVRKDFNIEDEIHGAQKPLIFPYNVSVTDNILEIRFYWAGKGTTRIPGGGAYGPLISALSIVSHSKPCSEPKSARRRIIVGVGFGVTALCLAIIIVGILWWNGCFKGMIREVKGTERHDSKMGTFTLEQIREATEDFSPVNKIGEGGFGPVYKGQLSDGTLVAVKQLSSKSRQGNREFLNEIGLISCLQHPNLVKLHGCCIEGDELMLVYEYMENNSLAQALFGSKDELKLDWPTRLRICIGIAKGLAFLHEESRLKIVHRDIKANNVLLDGNLNPKISDFGLARLDDEEKTHITTRIAGTIGYMAPEYALWGHLSYKADVYSYGVVVLEVVSGKSNKNYIPSDNHVCLLDKACHLQRRESLIELVDERLGSEVKPTEAIILMKVALLCTDVSPSLRPTMSEVVNMLEGRASIPDAIPQSSDFSEDIRFKSMRDIYQQRENHSLSSSQLDNSTGVLTLSSS 972
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g01279 972 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 618 723 - -
Viun3g01279 972 Gene3D Phosphorylase Kinase; domain 1 617 723 - -
Viun3g01279 972 FunFam Putative LRR receptor-like serine/threonine-protein kinase isoform A 197 264 - -
Viun3g01279 972 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 380 575 - -
Viun3g01279 972 FunFam Putative LRR receptor-like serine/threonine-protein kinase 724 930 - -
Viun3g01279 972 SUPERFAMILY L domain-like 72 336 - -
Viun3g01279 972 ProSitePatterns Serine/Threonine protein kinases active-site signature. 769 781 IPR008271 GO:0004672|GO:0006468
Viun3g01279 972 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 16 - -
Viun3g01279 972 Gene3D - 380 577 - -
Viun3g01279 972 Pfam Protein tyrosine and serine/threonine kinase 652 918 IPR001245 GO:0004672|GO:0006468
Viun3g01279 972 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 10 954 - -
Viun3g01279 972 CDD STKc_IRAK 654 920 - -
Viun3g01279 972 SUPERFAMILY Protein kinase-like (PK-like) 632 919 IPR011009 -
Viun3g01279 972 Gene3D Transferase(Phosphotransferase) domain 1 724 932 - -
Viun3g01279 972 ProSiteProfiles Protein kinase domain profile. 648 924 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g01279 972 Gene3D Ribonuclease Inhibitor 73 342 IPR032675 -
Viun3g01279 972 Pfam Malectin domain 382 570 IPR021720 -
Viun3g01279 972 SMART serkin_6 648 918 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g01279 972 MobiDBLite consensus disorder prediction 951 972 - -
Viun3g01279 972 FunFam Probable LRR receptor-like serine/threonine-protein kinase RFK1 33 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g01279 Viun-Chr3 7979811 7990699 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g01279 6 813 Receptor kinase-like Gene Family AT1G29750 56.938 0.0 940
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Viun3g01279 PK_Tyr_Ser-Thr 6.4e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g01279 - - mtr:11406167 1354.35