Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g01278 ATGCTACCTAGGATACTCTTTGCTTTCTTACTCTTTACTCTGAGTTGTTTTCGATGGCTAGAATATGCAGAATGCAAAGTGCCCCAACAGGAGGTTGATGCTCTTAAGGAAATCACTAGCACGATGGGGGCCACCAATTGGGAGTTTGATAGTGATGATGATTGTCCTAAAATTCTAAGATCAACACCAGATCCACCTAAAGAATCTGAAAGGACAATTGCTTGTGATTGCTCTATTGAAAACAACACCTGTCACGTAGTAGAGATCGTTTTCAAGAAGGTCAACCTTCCTGGCAAGCTTCCACCTCAATTGGTTAAGCTTTTTCCTTACCTCAGAAAAGTTGATTTTGCTTTTAACTACCTAAGTGGTACGATTCCAAAGGAATGGGGTTCAGAATATCTAACTTCAATGAACCTTGAAGCAAACCAATTTTCTGGTGTTGTTCCCCCTGATCTTGGAAATCTAACTAAGCTGGAAGCATTGATTTTATCGTCCAATAAATTGTCTGGGAAGTTACCGGTGACCCTTGCTAAGTTGCAGAATATGAAAGAATTCAGGATAAGTGACAACAATTTTAGCGGAGAAATACCTAGCTTCTTCACACAGAATTGGACATCACTTCAAAGATTAGACATGCTTGCAAGTGGAATGGAGGGACCTATACCATCAAACATATCTCTTTTGAGTACTTTACATCAATTGAGGATTAGTGACATAAATGGTCCAAGTCAGGATTTTCCTAATTTAAGCAACATGAGAGGAATGAAGACACTGATTTTGAGAAACTGCCATATTACTGGAGAGCTTCCTAGCTACTTGTGGAGTATGGACTTGGAGATGTTGGACGTGAGTTTCAATAAGTTGGTTGGGAAAATACCAGATACACGACATACAGGGCATCTGAAATTTCTCTTCCTAACTCACAACATGCTAAGTGGTAATATTCCCAAATCAGTCTTGATGGATGGAAGCAGCGTTGACCTTTCTTACAACAATTTTACATGGAAAGGACCAGATGAACATGCTTGTAGAGAGGACCTAAATTTAAACTTAAACTTGTTCCGGAGCTTCTTCGGGACCAAATTACGGCAGATTCTTCCATGTAAAGAGATCTCCAATTGTCCTGCATATTCACGTTGTTTTCATCTTAATTGTGGTGGAAAGGATGTGAAGGTGATGGAAAATGATGAAAATGTTCTCTATGTAGGAGATGGAGATGTGTTAGGTAGTGAAGCTGCTAAATATTGTATTAATTATGAAGGTCACTGGGGATATAGCAGCACTGGGGACTTCATGGATGATGGCATTTACCTAAATACTCGTTTTACTAGGACTTTGACATCTTCAAATTTGCCTGAATTATATCAAACGGCACGTGTTACTCCACTTTCGCTTACTTATTTTCTCTATTGCTTGGAAAATGGGAAATATACTGTAAAACTCCACTTCGCAGAAATACAATTTACAAACGATAAGACATATAGCAGTCTTGGGAAGCGCTTATTTGATATCTATATTCAGGAAAAACTAGTTAGGAAGGATTTTAATATTGAAGATGAAATTCATGGTGCTCAAAAACCACTTATTTTCCCATATAATGTCAGTGTAACAGACAATATTCTGGAGATTCGATTCTATTGGGCTGGAAAGGGGACTACAAGGATTCCTGGTGGTGGAGCTTATGGTCCCCTCATATCAGCACTCTCCATTGTTTCTCATTCTAAACCTTGTTCTGAACCAAAAAGTGCAAGGCGTAGGATAATTGTTGGAGTTGGGTTTGGTGTTACCGCTCTGTGCCTTGCCATCATCATTGTTGGAATCTTATGGTGGAATGGCTGCTTCAAAGGAATGATTAGGGAAGTAAAAGGTACTGAAAGACATGATTCTAAAATGGGGACATTTACATTAGAACAAATTAGAGAGGCCACGGAGGACTTTAGTCCAGTTAACAAGATTGGAGAAGGTGGTTTTGGTCCTGTCTACAAGGGTCAATTATCTGATGGTACACTGGTAGCAGTCAAACAACTCTCATCAAAGTCACGGCAGGGAAATCGTGAATTTTTAAACGAGATAGGCTTGATATCTTGTTTGCAGCACCCTAATCTTGTGAAACTCCATGGATGTTGCATTGAAGGGGATGAATTAATGTTGGTGTATGAGTACATGGAAAATAATAGCCTGGCTCAAGCTTTGTTCGGCTCAAAAGATGAACTTAAACTTGATTGGCCAACAAGGCTTAGGATCTGTATTGGCATAGCAAAAGGTCTTGCATTTCTTCATGAAGAATCAAGACTCAAGATTGTTCATCGAGACATCAAGGCTAATAATGTGTTACTGGATGGGAATTTAAACCCCAAAATATCTGACTTTGGGTTGGCTAGGCTTGATGACGAAGAGAAGACCCATATCACCACCCGAATAGCTGGGACAATAGGGTACATGGCACCGGAATATGCATTATGGGGTCACTTGTCTTACAAGGCTGATGTTTACAGTTATGGAGTTGTGGTCTTGGAAGTTGTTAGTGGGAAGAGCAATAAGAACTACATCCCTAGTGATAATCATGTTTGCCTTTTAGACAAGGCATGTCATCTACAGCGTAGAGAAAGCTTAATAGAACTTGTGGATGAAAGGTTGGGATCAGAGGTAAAACCAACAGAAGCAATAATTTTGATGAAAGTTGCTCTTCTGTGTACCGATGTATCACCTTCGCTTAGGCCTACAATGTCTGAGGTTGTAAACATGCTGGAAGGAAGAGCAAGCATTCCAGATGCTATCCCACAGTCAAGTGATTTTAGTGAAGATATAAGGTTTAAATCCATGAGGGATATCTATCAGCAAAGGGAAAACCACAGTTTAAGTTCAAGCCAGTTAGACAATTCAACAGGAGTTCTCACACTTTCCTCGTCCTAA 2913 0.3975 MLPRILFAFLLFTLSCFRWLEYAECKVPQQEVDALKEITSTMGATNWEFDSDDDCPKILRSTPDPPKESERTIACDCSIENNTCHVVEIVFKKVNLPGKLPPQLVKLFPYLRKVDFAFNYLSGTIPKEWGSEYLTSMNLEANQFSGVVPPDLGNLTKLEALILSSNKLSGKLPVTLAKLQNMKEFRISDNNFSGEIPSFFTQNWTSLQRLDMLASGMEGPIPSNISLLSTLHQLRISDINGPSQDFPNLSNMRGMKTLILRNCHITGELPSYLWSMDLEMLDVSFNKLVGKIPDTRHTGHLKFLFLTHNMLSGNIPKSVLMDGSSVDLSYNNFTWKGPDEHACREDLNLNLNLFRSFFGTKLRQILPCKEISNCPAYSRCFHLNCGGKDVKVMENDENVLYVGDGDVLGSEAAKYCINYEGHWGYSSTGDFMDDGIYLNTRFTRTLTSSNLPELYQTARVTPLSLTYFLYCLENGKYTVKLHFAEIQFTNDKTYSSLGKRLFDIYIQEKLVRKDFNIEDEIHGAQKPLIFPYNVSVTDNILEIRFYWAGKGTTRIPGGGAYGPLISALSIVSHSKPCSEPKSARRRIIVGVGFGVTALCLAIIIVGILWWNGCFKGMIREVKGTERHDSKMGTFTLEQIREATEDFSPVNKIGEGGFGPVYKGQLSDGTLVAVKQLSSKSRQGNREFLNEIGLISCLQHPNLVKLHGCCIEGDELMLVYEYMENNSLAQALFGSKDELKLDWPTRLRICIGIAKGLAFLHEESRLKIVHRDIKANNVLLDGNLNPKISDFGLARLDDEEKTHITTRIAGTIGYMAPEYALWGHLSYKADVYSYGVVVLEVVSGKSNKNYIPSDNHVCLLDKACHLQRRESLIELVDERLGSEVKPTEAIILMKVALLCTDVSPSLRPTMSEVVNMLEGRASIPDAIPQSSDFSEDIRFKSMRDIYQQRENHSLSSSQLDNSTGVLTLSSS 970
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g01278 970 Pfam Malectin domain 380 568 IPR021720 -
Viun3g01278 970 CDD STKc_IRAK 652 918 - -
Viun3g01278 970 Pfam Protein tyrosine and serine/threonine kinase 650 916 IPR001245 GO:0004672|GO:0006468
Viun3g01278 970 ProSiteProfiles Protein kinase domain profile. 646 922 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g01278 970 SMART serkin_6 646 916 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g01278 970 FunFam Putative LRR receptor-like serine/threonine-protein kinase isoform A 172 240 - -
Viun3g01278 970 Gene3D Phosphorylase Kinase; domain 1 615 721 - -
Viun3g01278 970 FunFam Putative LRR receptor-like serine/threonine-protein kinase 722 928 - -
Viun3g01278 970 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 16 - -
Viun3g01278 970 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 616 721 - -
Viun3g01278 970 ProSitePatterns Serine/Threonine protein kinases active-site signature. 767 779 IPR008271 GO:0004672|GO:0006468
Viun3g01278 970 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 10 952 - -
Viun3g01278 970 MobiDBLite consensus disorder prediction 949 970 - -
Viun3g01278 970 Gene3D Ribonuclease Inhibitor 203 379 IPR032675 -
Viun3g01278 970 SUPERFAMILY Protein kinase-like (PK-like) 630 917 IPR011009 -
Viun3g01278 970 Gene3D Ribonuclease Inhibitor 45 202 IPR032675 -
Viun3g01278 970 Gene3D Transferase(Phosphotransferase) domain 1 722 930 - -
Viun3g01278 970 SUPERFAMILY L domain-like 75 374 - -
Viun3g01278 970 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 378 573 - -
Viun3g01278 970 Gene3D - 380 575 - -
Viun3g01278 970 FunFam Probable LRR receptor-like serine/threonine-protein kinase RFK1 242 361 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g01278 Viun-Chr3 7979811 7990699 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g01278 6 811 Receptor kinase-like Gene Family AT1G29750 56.407 0.0 938
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Viun3g01278 PK_Tyr_Ser-Thr 6.4e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g01278 - - mtr:11406167 1351.65