Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g01277 ATGCTACCTAGGATACTCTTTGCTTTCTTACTCTTTACTCTGAGTTGTTTTCGATGGCTAGAATATGCAGAATGCAAAGTGCCCCAACAGGAGGTTGATGCTCTTAAGGAAATCACTAGCACGATGGGGGCCACCAATTGGGAGTTTGATAGTGATGATGATTGTCCTAAAATTCTAAGATCAACACCAGATCCACCTAAAGAATCTGAAAGGACAATTGCTTGTGATTGCTCTATTGAAAACAACACCTGTCACGTAGTAGAGATCGTTTTCAAGAAGGTCAACCTTCCTGGCAAGCTTCCACCTCAATTGGTTAAGCTTTTTCCTTACCTCAGAAAAGTTGATTTTGCTTTTAACTACCTAAGTGGTACGATTCCAAAGGAATGGGGTTCAGAATATCTAACTTCAATCTCTGTATATGCTAATAATCTGTCAGGGGAAATTCCTATAGAGTTGGGAGGAATTATCAATCTAACATACTTGAACCTTGAAGCAAACCAATTTTCTGGTGTTGTTCCCCCTGATCTTGGAAATCTAACTAAGCTGGAAGCATTGATTTTATCGTCCAATAAATTGTCTGGGAAGTTACCGGTGACCCTTGCTAAGTTGCAGAATATGAAAGAATTCAGGATAAGTGACAACAATTTTAGCGGAGAAATACCTAGCTTCTTCACACAGAATTGGACATCACTTCAAAGATTAGACATGCTTGCAAGTGGAATGGAGGGACCTATACCATCAAACATATCTCTTTTGAGTACTTTACATCAATTGAGGATTAGTGACATAAATGGTCCAAGTCAGGATTTTCCTAATTTAAGCAACATGAGAGGAATGAAGACACTGATTTTGAGAAACTGCCATATTACTGGAGAGCTTCCTAGCTACTTGTGGAGTATGGACTTGGAGATGTTGGACGTGAGTTTCAATAAGTTGGTTGGGAAAATACCAGATACACGACATACAGGGCATCTGAAATTTCTCTTCCTAACTCACAACATGCTAAGTGGTAATATTCCCAAATCAGTCTTGATGGATGGAAGCAGCGTTGACCTTTCTTACAACAATTTTACATGGAAAGGACCAGATGAACATGCTTGTAGAGAGGACCTAAATTTAAACTTAAACTTGTTCCGGAGCTTCTTCGGGACCAAATTACGGCAGATTCTTCCATGTAAAGAGATCTCCAATTGTCCTGCATATTCACGTTGTTTTCATCTTAATTGTGGTGGAAAGGATGTGAAGGTGATGGAAAATGATGAAAATGTTCTCTATGTAGGAGATGGAGATGTGTTAGGTAGTGAAGCTGCTAAATATTGTATTAATTATGAAGGTCACTGGGGATATAGCAGCACTGGGGACTTCATGGATGATGGCATTTACCTAAATACTCGTTTTACTAGGACTTTGACATCTTCAAATTTGCCTGAATTATATCAAACGGCACGTGTTACTCCACTTTCGCTTACTTATTTTCTCTATTGCTTGGAAAATGGGAAATATACTGTAAAACTCCACTTCGCAGAAATACAATTTACAAACGATAAGACATATAGCAGTCTTGGGAAGCGCTTATTTGATATCTATATTCAGGAAAAACTAGTTAGGAAGGATTTTAATATTGAAGATGAAATTCATGGTGCTCAAAAACCACTTATTTTCCCATATAATGTCAGTGTAACAGACAATATTCTGGAGATTCGATTCTATTGGGCTGGAAAGGGGACTACAAGGATTCCTGGTGGTGGAGCTTATGGTCCCCTCATATCAGCACTCTCCATTGTTTCTCATTCTAAACCTTGTTCTGAACCAAAAAGTGCAAGGCGTAGGATAATTGTTGGAGTTGGGTTTGGTGTTACCGCTCTGTGCCTTGCCATCATCATTGTTGGAATCTTATGGTGGAATGGCTGCTTCAAAGGAATGATTAGGGAAGTAAAAGGTACTGAAAGACATGATTCTAAAATGGGGACATTTACATTAGAACAAATTAGAGAGGCCACGGAGGACTTTAGTCCAGTTAACAAGATTGGAGAAGGTGGTTTTGGTCCTGTCTACAAGCACCCTAATCTTGTGAAACTCCATGGATGTTGCATTGAAGGGGATGAATTAATGTTGGTGTATGAGTACATGGAAAATAATAGCCTGGCTCAAGCTTTGTTCGGCTCAAAAGATGAACTTAAACTTGATTGGCCAACAAGGCTTAGGATCTGTATTGGCATAGCAAAAGGTCTTGCATTTCTTCATGAAGAATCAAGACTCAAGATTGTTCATCGAGACATCAAGGCTAATAATGTGTTACTGGATGGGAATTTAAACCCCAAAATATCTGACTTTGGGTTGGCTAGGCTTGATGACGAAGAGAAGACCCATATCACCACCCGAATAGCTGGGACAATAGGGTACATGGCACCGGAATATGCATTATGGGGTCACTTGTCTTACAAGGCTGATGTTTACAGTTATGGAGTTGTGGTCTTGGAAGTTGTTAGTGGGAAGAGCAATAAGAACTACATCCCTAGTGATAATCATGTTTGCCTTTTAGACAAGGCATGTCATCTACAGCGTAGAGAAAGCTTAATAGAACTTGTGGATGAAAGGTTGGGATCAGAGGTAAAACCAACAGAAGCAATAATTTTGATGAAAGTTGCTCTTCTGTGTACCGATGTATCACCTTCGCTTAGGCCTACAATGTCTGAGGTTGTAAACATGCTGGAAGGAAGAGCAAGCATTCCAGATGCTATCCCACAGTCAAGTGATTTTAGTGAAGATATAAGGTTTAAATCCATGAGGGATATCTATCAGCAAAGGGAAAACCACAGTTTAAGTTCAAGCCAGTTAGACAATTCAACAGGAGTTCTCACACTTTCCTCGTCCTAA 2877 0.3959 MLPRILFAFLLFTLSCFRWLEYAECKVPQQEVDALKEITSTMGATNWEFDSDDDCPKILRSTPDPPKESERTIACDCSIENNTCHVVEIVFKKVNLPGKLPPQLVKLFPYLRKVDFAFNYLSGTIPKEWGSEYLTSISVYANNLSGEIPIELGGIINLTYLNLEANQFSGVVPPDLGNLTKLEALILSSNKLSGKLPVTLAKLQNMKEFRISDNNFSGEIPSFFTQNWTSLQRLDMLASGMEGPIPSNISLLSTLHQLRISDINGPSQDFPNLSNMRGMKTLILRNCHITGELPSYLWSMDLEMLDVSFNKLVGKIPDTRHTGHLKFLFLTHNMLSGNIPKSVLMDGSSVDLSYNNFTWKGPDEHACREDLNLNLNLFRSFFGTKLRQILPCKEISNCPAYSRCFHLNCGGKDVKVMENDENVLYVGDGDVLGSEAAKYCINYEGHWGYSSTGDFMDDGIYLNTRFTRTLTSSNLPELYQTARVTPLSLTYFLYCLENGKYTVKLHFAEIQFTNDKTYSSLGKRLFDIYIQEKLVRKDFNIEDEIHGAQKPLIFPYNVSVTDNILEIRFYWAGKGTTRIPGGGAYGPLISALSIVSHSKPCSEPKSARRRIIVGVGFGVTALCLAIIIVGILWWNGCFKGMIREVKGTERHDSKMGTFTLEQIREATEDFSPVNKIGEGGFGPVYKHPNLVKLHGCCIEGDELMLVYEYMENNSLAQALFGSKDELKLDWPTRLRICIGIAKGLAFLHEESRLKIVHRDIKANNVLLDGNLNPKISDFGLARLDDEEKTHITTRIAGTIGYMAPEYALWGHLSYKADVYSYGVVVLEVVSGKSNKNYIPSDNHVCLLDKACHLQRRESLIELVDERLGSEVKPTEAIILMKVALLCTDVSPSLRPTMSEVVNMLEGRASIPDAIPQSSDFSEDIRFKSMRDIYQQRENHSLSSSQLDNSTGVLTLSSS 958
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g01277 958 FunFam Putative LRR receptor-like serine/threonine-protein kinase 710 916 - -
Viun3g01277 958 ProSitePatterns Serine/Threonine protein kinases active-site signature. 755 767 IPR008271 GO:0004672|GO:0006468
Viun3g01277 958 FunFam Probable LRR receptor-like serine/threonine-protein kinase RFK1 33 196 - -
Viun3g01277 958 MobiDBLite consensus disorder prediction 937 958 - -
Viun3g01277 958 Pfam Protein tyrosine and serine/threonine kinase 685 904 IPR001245 GO:0004672|GO:0006468
Viun3g01277 958 Pfam Malectin domain 404 592 IPR021720 -
Viun3g01277 958 Gene3D Phosphorylase Kinase; domain 1 639 686 - -
Viun3g01277 958 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 16 - -
Viun3g01277 958 SUPERFAMILY L domain-like 72 340 - -
Viun3g01277 958 Gene3D Ribonuclease Inhibitor 196 266 IPR032675 -
Viun3g01277 958 Gene3D Ribonuclease Inhibitor 267 372 IPR032675 -
Viun3g01277 958 Gene3D Ribonuclease Inhibitor 35 195 IPR032675 -
Viun3g01277 958 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 10 686 - -
Viun3g01277 958 SUPERFAMILY Protein kinase-like (PK-like) 653 928 IPR011009 -
Viun3g01277 958 Gene3D Phosphorylase Kinase; domain 1 687 710 - -
Viun3g01277 958 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 402 597 - -
Viun3g01277 958 ProSiteProfiles Protein kinase domain profile. 574 910 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g01277 958 Gene3D - 402 599 - -
Viun3g01277 958 FunFam Putative LRR receptor-like serine/threonine-protein kinase isoform A 197 264 - -
Viun3g01277 958 Gene3D Transferase(Phosphotransferase) domain 1 711 918 - -
Viun3g01277 958 FunFam Probable LRR receptor-like serine/threonine-protein kinase RFK1 266 385 - -
Viun3g01277 958 SMART serkin_6 670 904 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g01277 Viun-Chr3 7979811 7990702 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g01277 6 799 Receptor kinase-like Gene Family AT1G29750 54.426 0.0 894
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Viun3g01277 PK_Tyr_Ser-Thr 2.2e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g01277 - - mtr:11406167 1313.52