Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g01262 ATGCAACCGAACAATCATAACTGCGTTCCTTTAACACCAAGGTCCAGATTGGAAAGGCTTCTGAGGGAAAGAGAGATAAGGAAGTCCTTCAAGAATCAACCAAGTGATGAAGCAAGAGATGGGAACAAAGAGGGAGAACAATGTTATGGTGATTCAAGCATAAGTGAGAATGACATTTCAGGTTTTCATAAAGAGGAAGAAGCCTCGGAAACGAATAGGCAAGATGAGAGGGGAAGCAAACAACGTTTGTTGGTGGTAGCTAACAGGTTGCCAGTCTCTGCTGTTAGAGATGGTGTGGAGTCATATCATCTTGAGATCAGTGTAGGAGGACTAGTCAGTGCACTTCTAGGCAAGAAAAAGTTTTTTGATGCCAGATGGATTGGGTGGGCTGGTGTGAATGTGCCTGATGATGTTGGACGGAGAGCATTGACTAAAGCTTTGGCTGAAATGCGATGTATTCCAGTATTTCTTGATGAGGAGATAGTTAATCAGTACTATAATGGCTACTGCAACAACATCTTATGGCCTCTATTTCATTACCTCGGACTTCCACAAGAAGATCGACTTGCTACCACTCGTACTTTCCAATCCCAATTTGATGCATATAAGAAGGCAAACCAAATCTTTGCTGATGTAGTAAATATGCATTATGAGGAAGGAGATGTTGTTTGGTGCCATGATTACCACCTAATGTTCCTTCCAAAATGTTTAAAAGAACGCAACGACAAAATGAAAGTTGGTTGGTTTCTCCATACACCCTTTCCTTCCTCAGAAATACATAGGACTCTACCATCCAGATCAGAGCTGTTGAGATCAGTTCTTGAAGCTGATCTTGTGGGATTCCATACCTATGATTATGCAAGGCATTTTGTCAGTGCTTGTACTCGTATTCTTGGGCTTGAGGGCACACCAGACGGAGTGGAAGATCGAGGGAAGCTAACACGTGTGGCTGCGTTTCCTATTGGGATTGACTCTGAGAGATTCATTCAAGCCCTTGAACTCCCTGAAGTCCAGGCGCACATGAAAGAACTGAAAGAAAGATTTGCAGGCCGAAAGGTAATGTTGGGCGTGGATCGTCTTGATATGATAAAAGGAATTCCTCAGAAAATATTGGCATTTGAAAAGTTCCTTGAGGAGAATTCCCACTGGCGTGATAAAGTTGTCTTGCTGCAAATTGCTGTACCTACTAGAAAAGATGTTCCTGATTACCAAAGGCTTGCAAGCCAAGTGCATGAGATTGTAGGACGCATCAATGGAAGATTTGGAACACTTACAGCTGTTCCACTACACCATCTGGATCGATCACTTGACTTTCATGAATTATGTGCACTCTATGCTGTAACAGACGTTGCACTTGTTACATCTTTGAGAGATGGAATGAATCTTGTCAGCTATGAATTTGTTGCGTGTCAAGCATCCAAGAAGGGGGTTCTCATTTTAAGTGAGTTTGCTGGTGCAGCACAGTCTCTTGGTGCTGGTGCTATCTTGGTAAATCCGTGGAACATAACAGAGGTTGCTGCTTCTATTGGTTATGCGCTGGATATGCCAGCCGATGAAAGAGAAAAACGGCATCAATTTAATTTCAGACATGTGAAGACTCACACATCACAAGAATGGGCTGCAACTTTTGTGAGTGAGCTAAATGATACCATTGTTGAAGCTCAACTTAGGACAAGACAAGATCCTCCATTGCTTCCCAACAAAGTGGCAGTTGACTGTTATAAAAAATCCAGTAACCGATTAATCATACTGGGTTTCAATGCCACTTTGACTGAGCCAGTGGATGCCCTTGGACGGGCTGGTCAAATTAGAGAACTGGAACTTAAATTACACCCAAATCTGAAGGGACCTTTGAAGAAGTTATCCGATGATCCACTGACAACGATAGTACTTCTCAGTGGGAGCAATCGAGCAGTCCTGGACAAAAACTTCAGTGAATTTAATATGTGGTTGGCAGCGGAAAATGGAATGTTTCTGCGACCCACTTCAAGTGAGTGGATGACAACCATGCCTGAAAATTTAAACATGGATTGGGTTGATAGCGTGAAGCATGTTTTTGAGTATTTTACTGAAAGAACTCCCCGGTCACATTTTGAGCTTAGGGAGACTTCAGTTGTATGGAATTACAAGTACGCAGATGTTGAATTTGGAAAGATTCAAGCAAGAGATTTGCTTCAGCATCTGTGGACAGGACCAATATCAAATGCATCTCTTGAGGTTGTCCAAGGTGGTCGATCTGTTGAGGTGCGCACAGTTGGCGTGTCAAAGGGAGCAGCTATTGATCGTATCCTTGGAGAGATAGTTCATAACAAAGGTATGAAGGCACCAATTGACTATGTCCTATGCATTGGGCACTTTCTATCCAAGGACGAAGATGTGTATAAATTTTTTGAGCCGGAGCTTCCTTGTGAATCACCTTCAAATGAAGGTTCCTCCGTGCTTGATCTAAAAGGTGATAATTACTTCTCTTGTGTTGTTGGACGGAAAAGATCAAGTGCACGTTACCATCTTAAAACCTCAGATGATGTTGTCAACCTCTTAAGTGACTTGGCAGAACATTCTTCATCAACAACTTAG 2577 0.4249 MQPNNHNCVPLTPRSRLERLLREREIRKSFKNQPSDEARDGNKEGEQCYGDSSISENDISGFHKEEEASETNRQDERGSKQRLLVVANRLPVSAVRDGVESYHLEISVGGLVSALLGKKKFFDARWIGWAGVNVPDDVGRRALTKALAEMRCIPVFLDEEIVNQYYNGYCNNILWPLFHYLGLPQEDRLATTRTFQSQFDAYKKANQIFADVVNMHYEEGDVVWCHDYHLMFLPKCLKERNDKMKVGWFLHTPFPSSEIHRTLPSRSELLRSVLEADLVGFHTYDYARHFVSACTRILGLEGTPDGVEDRGKLTRVAAFPIGIDSERFIQALELPEVQAHMKELKERFAGRKVMLGVDRLDMIKGIPQKILAFEKFLEENSHWRDKVVLLQIAVPTRKDVPDYQRLASQVHEIVGRINGRFGTLTAVPLHHLDRSLDFHELCALYAVTDVALVTSLRDGMNLVSYEFVACQASKKGVLILSEFAGAAQSLGAGAILVNPWNITEVAASIGYALDMPADEREKRHQFNFRHVKTHTSQEWAATFVSELNDTIVEAQLRTRQDPPLLPNKVAVDCYKKSSNRLIILGFNATLTEPVDALGRAGQIRELELKLHPNLKGPLKKLSDDPLTTIVLLSGSNRAVLDKNFSEFNMWLAAENGMFLRPTSSEWMTTMPENLNMDWVDSVKHVFEYFTERTPRSHFELRETSVVWNYKYADVEFGKIQARDLLQHLWTGPISNASLEVVQGGRSVEVRTVGVSKGAAIDRILGEIVHNKGMKAPIDYVLCIGHFLSKDEDVYKFFEPELPCESPSNEGSSVLDLKGDNYFSCVVGRKRSSARYHLKTSDDVVNLLSDLAEHSSSTT 858
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g01262 858 Gene3D Glycogen Phosphorylase B; 330 533 - -
Viun3g01262 858 MobiDBLite consensus disorder prediction 24 79 - -
Viun3g01262 858 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 74 329 - -
Viun3g01262 858 NCBIfam alpha,alpha-trehalose-phosphate synthase (UDP-forming) 82 548 IPR012766 GO:0003825|GO:0005992
Viun3g01262 858 Pfam Glycosyltransferase family 20 82 548 IPR001830 GO:0003824|GO:0005992
Viun3g01262 858 MobiDBLite consensus disorder prediction 58 79 - -
Viun3g01262 858 Pfam Trehalose-phosphatase 607 839 IPR003337 GO:0003824|GO:0005992
Viun3g01262 858 CDD GT20_TPS 82 548 IPR001830 GO:0003824|GO:0005992
Viun3g01262 858 CDD HAD_TPP 581 845 - -
Viun3g01262 858 Gene3D - 608 766 IPR023214 -
Viun3g01262 858 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 81 551 - -
Viun3g01262 858 Gene3D - 672 752 - -
Viun3g01262 858 MobiDBLite consensus disorder prediction 24 46 - -
Viun3g01262 858 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 718 858 - -
Viun3g01262 858 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1-like 330 533 - -
Viun3g01262 858 SUPERFAMILY HAD-like 580 851 IPR036412 -
Viun3g01262 858 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 672 752 - -
Viun3g01262 858 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 68 852 IPR001830 GO:0003824|GO:0005992
Viun3g01262 858 Gene3D Glycogen Phosphorylase B; 73 329 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g01262 Viun-Chr3 7865244 7874302 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g01262 805 856 Trehalose Biosynthesis Gene Families AT1G78580 57.692 6.11e-10 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g01262 K16055 - gmx:100797533 1462.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g01262 3 7865244 7874302 Viun3g01262 3 7865244 7874302 ECH