Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g01261 ATGCAACCGAACAATCATAACTGCGTTCCTTTAACACCAAGGTCCAGATTGGAAAGGCTTCTGAGGGAAAGAGAGATAAGGAAGTCCTTCAAGAATCAACCAAGTGATGAAGCAAGAGATGGGAACAAAGAGGGAGAACAATGTTATGGTGATTCAAGCATAAGTGAGAATGACATTTCAGGTTTTCATAAAGAGGAAGAAGCCTCGGAAACGAATAGGCAAGATGAGAGGGGAAGCAAACAACGTTTGTTGGTGGTAGCTAACAGGTTGCCAGTCTCTGCTGTTAGAGATGGTGTGGAGTCATATCATCTTGAGATCAGTGTAGGAGGACTAGTCAGTGCACTTCTAGGTGTAAAGGAGTTTGATGCCAGATGGATTGGGTGGGCTGGTGTGAATGTGCCTGATGATGTTGGACGGAGAGCATTGACTAAAGCTTTGGCTGAAATGCGATGTATTCCAGTATTTCTTGATGAGGAGATAGTTAATCAGTACTATAATGGCTACTGCAACAACATCTTATGGCCTCTATTTCATTACCTCGGACTTCCACAAGAAGATCGACTTGCTACCACTCGTACTTTCCAATCCCAATTTGATGCATATAAGAAGGCAAACCAAATCTTTGCTGATGTAGTAAATATGCATTATGAGGAAGGAGATGTTGTTTGGTGCCATGATTACCACCTAATGTTCCTTCCAAAATGTTTAAAAGAACGCAACGACAAAATGAAAGTTGGTTGGTTTCTCCATACACCCTTTCCTTCCTCAGAAATACATAGGACTCTACCATCCAGATCAGAGCTGTTGAGATCAGTTCTTGAAGCTGATCTTGTGGGATTCCATACCTATGATTATGCAAGGCATTTTGTCAGTGCTTGTACTCGTATTCTTGGGCTTGAGGGCACACCAGACGGAGTGGAAGATCGAGGGAAGCTAACACGTGTGGCTGCGTTTCCTATTGGGATTGACTCTGAGAGATTCATTCAAGCCCTTGAACTCCCTGAAGTCCAGGCGCACATGAAAGAACTGAAAGAAAGATTTGCAGGCCGAAAGGTAATGTTGGGCGTGGATCGTCTTGATATGATAAAAGGAATTCCTCAGAAAATATTGGCATTTGAAAAGTTCCTTGAGGAGAATTCCCACTGGCGTGATAAAGTTGTCTTGCTGCAAATTGCTGTACCTACTAGAAAAGATGTTCCTGATTACCAAAGGCTTGCAAGCCAAGTGCATGAGATTGTAGGACGCATCAATGGAAGATTTGGAACACTTACAGCTGTTCCACTACACCATCTGGATCGATCACTTGACTTTCATGAATTATGTGCACTCTATGCTGTAACAGACGTTGCACTTGTTACATCTTTGAGAGATGGAATGAATCTTGTCAGCTATGAATTTGTTGCGTGTCAAGCATCCAAGAAGGGGGTTCTCATTTTAAGTGAGTTTGCTGGTGCAGCACAGTCTCTTGGTGCTGGTGCTATCTTGGTAAATCCGTGGAACATAACAGAGGTTGCTGCTTCTATTGGTTATGCGCTGGATATGCCAGCCGATGAAAGAGAAAAACGGCATCAATTTAATTTCAGACATGTGAAGACTCACACATCACAAGAATGGGCTGCAACTTTTGTGAGTGAGCTAAATGATACCATTGTTGAAGCTCAACTTAGGACAAGACAAGATCCTCCATTGCTTCCCAACAAAGTGGCAGTTGACTGTTATAAAAAATCCAGTAACCGATTAATCATACTGGGTTTCAATGCCACTTTGACTGAGCCAGTGGATGCCCTTGGACGGGCTGGTCAAATTAGAGAACTGGAACTTAAATTACACCCAAATCTGAAGGGACCTTTGAAGAAGTTATCCGATGATCCACTGACAACGATAGTACTTCTCAGTGGGAGCAATCGAGCAGTCCTGGACAAAAACTTCAGTGAATTTAATATGTGGTTGGCAGCGGAAAATGGAATGTTTCTGCGACCCACTTCAAGTGAGTGGATGACAACCATGCCTGAAAATTTAAACATGGATTGGGTTGATAGCGTGAAGCATGTTTTTGAGTATTTTACTGAAAGAACTCCCCGGTCACATTTTGAGCTTAGGGAGACTTCAGTTGTATGGAATTACAAGTACGCAGATGTTGAATTTGGAAAGATTCAAGCAAGAGATTTGCTTCAGCATCTGTGGACAGGACCAATATCAAATGCATCTCTTGAGGTTGTCCAAGGTGGTCGATCTGTTGAGGTGCGCACAGTTGGCGTGTCAAAGGGAGCAGCTATTGATCGTATCCTTGGAGAGATAGTTCATAACAAAGGTATGAAGGCACCAATTGACTATGTCCTATGCATTGGGCACTTTCTATCCAAGGACGAAGATGTGTATAAATTTTTTGAGCCGGAGCTTCCTTGTGAATCACCTTCAGTACCAAGAGCTATGCTATCCAAATCCAAGTCATACAGACCATCATCTTTGCTCAAATTTGCAACCAACAAAGCCGGGAATAAGGCTGCTCAGTACAAGAAACAACGTTCGTTGTCAAGCTTAGAGAAGAGAGAAATTGAACTGAGAGGAACATATCGTGATAAAATATCACAGAATGAAGGTTCCTCCGTGCTTGATCTAAAAGGTGATAATTACTTCTCTTGTGTTGTTGGACGGAAAAGATCAAGTGCACGTTACCATCTTAAAACCTCAGATGATGTTGTCAACCTCTTAAGTGACTTGGCAGAACATTCTTCATCAACAACTTAG 2748 0.4243 MQPNNHNCVPLTPRSRLERLLREREIRKSFKNQPSDEARDGNKEGEQCYGDSSISENDISGFHKEEEASETNRQDERGSKQRLLVVANRLPVSAVRDGVESYHLEISVGGLVSALLGVKEFDARWIGWAGVNVPDDVGRRALTKALAEMRCIPVFLDEEIVNQYYNGYCNNILWPLFHYLGLPQEDRLATTRTFQSQFDAYKKANQIFADVVNMHYEEGDVVWCHDYHLMFLPKCLKERNDKMKVGWFLHTPFPSSEIHRTLPSRSELLRSVLEADLVGFHTYDYARHFVSACTRILGLEGTPDGVEDRGKLTRVAAFPIGIDSERFIQALELPEVQAHMKELKERFAGRKVMLGVDRLDMIKGIPQKILAFEKFLEENSHWRDKVVLLQIAVPTRKDVPDYQRLASQVHEIVGRINGRFGTLTAVPLHHLDRSLDFHELCALYAVTDVALVTSLRDGMNLVSYEFVACQASKKGVLILSEFAGAAQSLGAGAILVNPWNITEVAASIGYALDMPADEREKRHQFNFRHVKTHTSQEWAATFVSELNDTIVEAQLRTRQDPPLLPNKVAVDCYKKSSNRLIILGFNATLTEPVDALGRAGQIRELELKLHPNLKGPLKKLSDDPLTTIVLLSGSNRAVLDKNFSEFNMWLAAENGMFLRPTSSEWMTTMPENLNMDWVDSVKHVFEYFTERTPRSHFELRETSVVWNYKYADVEFGKIQARDLLQHLWTGPISNASLEVVQGGRSVEVRTVGVSKGAAIDRILGEIVHNKGMKAPIDYVLCIGHFLSKDEDVYKFFEPELPCESPSVPRAMLSKSKSYRPSSLLKFATNKAGNKAAQYKKQRSLSSLEKREIELRGTYRDKISQNEGSSVLDLKGDNYFSCVVGRKRSSARYHLKTSDDVVNLLSDLAEHSSSTT 915
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g01261 915 Pfam Glycosyltransferase family 20 82 547 IPR001830 GO:0003824|GO:0005992
Viun3g01261 915 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 81 550 - -
Viun3g01261 915 MobiDBLite consensus disorder prediction 22 46 - -
Viun3g01261 915 NCBIfam alpha,alpha-trehalose-phosphate synthase (UDP-forming) 82 547 IPR012766 GO:0003825|GO:0005992
Viun3g01261 915 SUPERFAMILY HAD-like 579 906 IPR036412 -
Viun3g01261 915 Gene3D - 607 765 IPR023214 -
Viun3g01261 915 MobiDBLite consensus disorder prediction 58 79 - -
Viun3g01261 915 Gene3D - 671 751 - -
Viun3g01261 915 CDD HAD_TPP 580 799 - -
Viun3g01261 915 Pfam Trehalose-phosphatase 606 821 IPR003337 GO:0003824|GO:0005992
Viun3g01261 915 Gene3D Glycogen Phosphorylase B; 73 328 - -
Viun3g01261 915 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 671 751 - -
Viun3g01261 915 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 68 909 IPR001830 GO:0003824|GO:0005992
Viun3g01261 915 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 74 328 - -
Viun3g01261 915 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1-like 329 532 - -
Viun3g01261 915 CDD GT20_TPS 82 547 IPR001830 GO:0003824|GO:0005992
Viun3g01261 915 Gene3D Glycogen Phosphorylase B; 329 532 - -
Viun3g01261 915 MobiDBLite consensus disorder prediction 22 79 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g01261 Viun-Chr3 7865244 7874302 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g01261 1 913 Trehalose Biosynthesis Gene Families AT1G78580 73.004 0.0 1367
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g01261 K16055 - gmx:100816642 1627.45