Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g01260 ATGGGGATTCAGGGGTTTTTGCCGCTGTTGAAATCGATTATGGTTCCGATCAATATCAAGGACTTGAAGGGTTGTTCTGTAGCGGTAGACACCTATTCTTGGCTCCACAAAGGTGCCCTTTCTTGCAGCACCGAACTCTGCAAAGGGATACCCACTACCAGGCACATTGAGTATTGCATGCACAGAGTCAATTTGCTGCGCCATTATGGGGTTAAGCCCATTCTAGTGTTTGATGGGGGACTTCTGCCAATGAAGAATGAACAAGAGATCAAGCGTGCCAGGGCTAGAAAGGATAATTTTGCACGTGCAGTTGAACACGAGTCAGATGGAAATTCAGCTGCTGCTTATGAGTGCTACCAGAAAGCAGTTGATATTTCTCCCCAAGTTGCACGTGAACTAATTCAGGTATTGAAGCAGGAGAATGTGCAGTATATTGTTGCTCCTTATGAGGCAGATGCCCAGATGACATTCTTGGCAATTAGTGGACAAGTCGACGTAGTTATAACTGAAGATTCTGATCTTATACCATTTGGTTGCCCTAGAATTCTCTTTAAAATGGACAAGTTTGGTCAAGGAGTCCAGTTCCAGTACTCCATGCTACAAAAGAATAAGGAGCTTAATTTTGAAGGGTTCAACAGACAAATGGTTCTTGAAATGTGTATTTTGAGTGGCTGTGACTATCTTCAGTCCTTGCCAGGTATGGGTCTTAAAAGAGCCCATGCAAGCATAAAAAAATTTGGAAGTTATGATAAGGTACTTAAGCACTTGAGATACAGTGGAGTTTCTGTGCCTCCCTTGTATGAAGAGTCATTCAAGAAGGCTATACGTACTTTCCAATATCAACGGGTTTATGATCCAATTAATGAAAATATTGTCCATTTGTCTAATATACCTGATGATATTGGTGACGAGTTAGACTTTTTAGGCCCACCCATTCCAAAAGATATAGCACAAAGAATAGCAAAAGGGGATCTTGATCCAATTACCAAAATGCCATTTGAGGGAGAGAATCTTACAGCCAGATTGACAATTGCAGGAACTAGTCAATTTGAAACTCTTCGTTCTGAAAGTACAAAGAAAAAGATTGATTTGCCTGTGCAGAAGAATCTCTTGACCAAGTATTTTTGTGTTGCTTCTCTTGAAGCAAAAAGGAAATTCAGAGCACCTCGGGTGTCCCCTACTGCTGCTAACGAAACAAAGAACTGTACTGCATCAAAAATCGACTATGAGATTTCGGGCAGTGCCCGTCATCCTAATTGCCATACTGAATATGATTCTGCCACAAAACTTTCTGAATTTACAGAGTCTCCATATCATGTTTCTATGATCCATGAGGAGAAGAAAAACCCTGAACATGCACTACTGCAACAGCCTAGGCAGCCAATTCATAAACCATGTTTGGGTTTGCATAAGGAGCATGGGCACACTAATGCCCAAGACACAGTAGAAGAAAAAACCAGGGAGGTTTCTGGGAAGGTTATTGTAAGGAGTGCTTATTTTCAGCACAAGCAAGTGGAAAAGAATGCTTGTGACGAGAAACATGAATACCAATCCTCTGGCATAGTCATTGATGAGAGAAAAAAAGCCATATCTGACAGTGATTTATGTAATGATCATTTGAAGAATAAAGACCAGGGATTCCATGAGAAAGTTGAAGGAAAAACCAGGGAGACAGGAAAGGCAATTGTAAGGAGTGCTTATTTTCAGCACAAACAAGTGGAAAAGAATGTTCGTGATGAGAAACAAGAGTGCCAGTCCTCTGGCATTGTCATTGATGAGAGAAAAAATGGCATATTTGACAGTTATTTATATAATAACCATTTGAAGAATAAAGACCAGGGATTCCATGACATAGTTGAAGGTAAAACCAGGGAGACAACTAGAAAGGTAATTGTAAGGAGTGCTTATTTTCAGCACAAGCAAGTACAAAAGAATGTTTGTGATGAAAAACAAGATTATCTGTCCTCTGGCATTGTCACTGACAACAGAAGTGCCATATCTGACAGTGATTTATGTAACAACCAGTTGAAGAATAAAGACTTGAAAAGGAAGTTATCCCCTAATGACAATATTCAAGATGAAAATTTGCATCCTAGGCAAGTGCAGCGTGCTTCACCTCCGCAAAGTAACGGTTGCTGTGATCACAACGTTGAAGGACCAGTTACAGAGAATAATGGTGAAGAAGAAAAATTCGGGACAAACATTTCCCATCTGGGTCAGTATTCAGAAATAGCTGAGAAGTCTATGGAAAGATTTGTCTCTGTGATATCATCCTTTAGATGCACTTCTGGCACTCGTGTCAGTGGTCTCCGAGCTCCGCTGAAAGATGTTCGAAACACTTCCAATAATAGGCCAAAAACTGTGGACTTTGGACAATATGCATATGTGCCAAAGAACACAAAGATTAGAAGAATAGCTCCTGAGAATTAA 2430 0.4045 MGIQGFLPLLKSIMVPINIKDLKGCSVAVDTYSWLHKGALSCSTELCKGIPTTRHIEYCMHRVNLLRHYGVKPILVFDGGLLPMKNEQEIKRARARKDNFARAVEHESDGNSAAAYECYQKAVDISPQVARELIQVLKQENVQYIVAPYEADAQMTFLAISGQVDVVITEDSDLIPFGCPRILFKMDKFGQGVQFQYSMLQKNKELNFEGFNRQMVLEMCILSGCDYLQSLPGMGLKRAHASIKKFGSYDKVLKHLRYSGVSVPPLYEESFKKAIRTFQYQRVYDPINENIVHLSNIPDDIGDELDFLGPPIPKDIAQRIAKGDLDPITKMPFEGENLTARLTIAGTSQFETLRSESTKKKIDLPVQKNLLTKYFCVASLEAKRKFRAPRVSPTAANETKNCTASKIDYEISGSARHPNCHTEYDSATKLSEFTESPYHVSMIHEEKKNPEHALLQQPRQPIHKPCLGLHKEHGHTNAQDTVEEKTREVSGKVIVRSAYFQHKQVEKNACDEKHEYQSSGIVIDERKKAISDSDLCNDHLKNKDQGFHEKVEGKTRETGKAIVRSAYFQHKQVEKNVRDEKQECQSSGIVIDERKNGIFDSYLYNNHLKNKDQGFHDIVEGKTRETTRKVIVRSAYFQHKQVQKNVCDEKQDYLSSGIVTDNRSAISDSDLCNNQLKNKDLKRKLSPNDNIQDENLHPRQVQRASPPQSNGCCDHNVEGPVTENNGEEEKFGTNISHLGQYSEIAEKSMERFVSVISSFRCTSGTRVSGLRAPLKDVRNTSNNRPKTVDFGQYAYVPKNTKIRRIAPEN 809
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g01260 809 CDD H3TH_EXO1 214 285 IPR037315 GO:0003677|GO:0035312
Viun3g01260 809 SMART HhH_4 213 246 IPR008918 GO:0003677|GO:0003824
Viun3g01260 809 CDD PIN_EXO1 1 202 IPR044752 GO:0046872
Viun3g01260 809 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 404 IPR006084 -
Viun3g01260 809 SMART xpgineu 138 213 IPR006086 GO:0004518
Viun3g01260 809 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 211 334 IPR036279 -
Viun3g01260 809 SUPERFAMILY PIN domain-like 2 226 IPR029060 -
Viun3g01260 809 ProSitePatterns XPG protein signature 1. 71 85 IPR019974 GO:0016788
Viun3g01260 809 MobiDBLite consensus disorder prediction 684 728 - -
Viun3g01260 809 FunFam exonuclease 1 209 281 - -
Viun3g01260 809 Gene3D - 209 281 - -
Viun3g01260 809 SMART xpgn3 1 99 IPR006085 GO:0004518
Viun3g01260 809 MobiDBLite consensus disorder prediction 691 712 - -
Viun3g01260 809 FunFam Exonuclease 1, putative 1 207 - -
Viun3g01260 809 Pfam XPG I-region 141 226 IPR006086 GO:0004518
Viun3g01260 809 Gene3D - 1 207 - -
Viun3g01260 809 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 73 92 IPR006084 -
Viun3g01260 809 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 24 38 IPR006084 -
Viun3g01260 809 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 137 154 IPR006084 -
Viun3g01260 809 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 216 231 IPR006084 -
Viun3g01260 809 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 158 178 IPR006084 -
Viun3g01260 809 Pfam XPG N-terminal domain 1 98 IPR006085 GO:0004518
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g01260 Viun-Chr3 7855309 7863995 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g01260 1 264 Core DNA Replication Machinery Family AT5G26680 27.798 2.34e-20 92.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g01260 K10746 - gmx:100798062 1070.07