Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g01258 ATGCCTCGCAAAGTCAGTTATGGACTCGATTTGGACGATGACTATTACTACGATGATGATTATGACGATTATGATTATGATGATGTCGATGCAGAAGGCCATGGAGGACCTGATACAAAGCAAGAGGCCATCAGGCCAGGTCTTTGGCAATGCTCCATCTGCACTTATGACAATGAAGAGAGTATGGCATTTTGTGATATATGTGGTGTTGTACGTCGACCCTTGCCTAACATTGGAACTTCCGACAGTAGTAAAACAGCTGAAGACATACACAAAATTCCTGGAGCATCCAAGTTGGCCAGGTCTCTTTTTCAATCATCACCACAACAGATTCCTAAAGAGGTTATATTATTTCCAAAGCCGGGTGATGGTTTTCTGACAGATGGCAATATCTTCTACAAGTTTGAGAATGTTCGGGGAGAATTTCATGAAATTCATAAAGATTTTAGTACTCAGAGCCATCCACACATAAAAATAGATCCTTTCAAGTTTGACGATCCATCCCCTGATGATGTCATTTTTACTGGTCTACATTCTTCCAAAGTGGGATTGAAAGACAATGCTACAAACAGAAAAAGTTCGAAAATTTCATCAAGCATCAGAGAGATAAATGAACTCTCTGTTCAATCAAATGCTGAAAGTTCAAACAACTTATCTTCCTTAACGCAAAAAAGCAGGCAGGATAGTTCAGCCAAGAGCAAGCTTTCAAAAAATGTAGCAACTGGTCTGCAAGCAAGTGGTAAAACATCAAACAGCTTGCCAGGATCTCTGCCAAAAGACAAAGGTGAAAATATTAATAAAATAAACTCTTTGAAAAATGGTACAATTGATATTCAATCGAGCAAAGAGAAGTCTGGTAGTTCGTCTGCACTGTCAAAAGTCAAGGAAAGTGATAAGAATAGTTTCCCTTCTGCCAAAGATGGAAAACCGGAAAGTATTTCCAGCAATTTCAACATGACTGCTGATGTAAGATCTGGAAATTCAGACAATACTAATGCTAAGAAACCTCATTCACGTGTTTCTTATAAGCCAGAAAAATGGATGCTACCTCAACAAGCTGAAGATACATTGACTCAGCTGAATCTTGCAATTGTTGGCCATGTTGATTCTGGAAAATCAACCCTATCTGGTAGGTTACTGCACCTATTGGGACGGATTTCCCAGAAAGAGATGCACAAGTATGAAAGGGAGGCCAAGTTACAGGGCAAGGGATCTTTTGCTTATGCTTGGGCACTAGATGAAAGCTCTGAAGAAAGAGAAAGGGGAATAACTATGACAGTTGCTGTTGCTTATTTTGACACCAAGAAATATCATGTTGTTTTGCTCGACTCTCCTGGCCATAAAGATTTTGTCCCGAACATGATTTCTGGGGCAACACAAGCAGATGCTGCAATCCTTGTTATAGATGCCTCGCTTGGTTCATTTGAAGCTGGTATGGATGGCAGCAAAGGGCAAACAAGGGAGCATGCACAACTTATCAGAAGTTTTGGTGTTGATCGGGTTATAGTTGCTGTAAACAAGATGGATGCTGTTGCGTACACCAAAGATCGGTTTGATTTTATAAGGCAGCATCTGGGAGCGTTTCTGCACTCATGTGGTTTCAAAGATTCTTCTCTATCTTGGATTCCTATGAGTGCCATGGAAAATCAAAATTTGGTGGCATCCCCTTCTGACACTCGTTTCAAAAACTGGTATGGTGGACCTTATCTGTTAGATGCGATTGACTCTCTCCAAGCTCCTACTAGAGAATTTTCAAAACCTCTACTAATGCCAGTATGTGATGTCATCAAATCAACTATGCTTGGACAGGCATCTGCTTCTGGTAAACTGGAAGCAGGAGCTCTTCGGACTGGATCTAAGGTCTTAGTTATGCCTTCAGCTGTAGTGGGAACAGTACGCTCATTGGAGCGTGACTCTAATGCCTGCACTGTTGCAAGAGCTGGAGATAATGTAGCTGTAACATTGCAAGGTGTCGATGGAAATCAGGTGATGGCAGGAGATGTACTATGCCATCCTGACTTTCCTGTTGCAGTTGCTAAGCATTTGGAGTTGAAAGTGCTAGTGTTGGATGGTGCAAGTCCAATATTGGTGGGCACACAGTTGGAGTTTCATATACACCATGCGAAGGAACCAGCTAGAGTTTCAAGAATATTGTCACTACTTGATCCCAAGACTGGTAAGGTGACCAAAAAGTCGCCTCGTTGTCTCACTGCAAAGCAAAGTGCAGTAATTGAGGTGGTTTTGAATGAGTCTGTCTGTGTGGTAGAGTTCTCTAGTTGTAAAGCTCTTGGAAGGGTGTCCCTAAGATCCATGGGAAGAACAATTGCTGTTGGAGTTGTGACAAGAATAATTGAGGACGAAGGTTAA 2367 0.4157 MPRKVSYGLDLDDDYYYDDDYDDYDYDDVDAEGHGGPDTKQEAIRPGLWQCSICTYDNEESMAFCDICGVVRRPLPNIGTSDSSKTAEDIHKIPGASKLARSLFQSSPQQIPKEVILFPKPGDGFLTDGNIFYKFENVRGEFHEIHKDFSTQSHPHIKIDPFKFDDPSPDDVIFTGLHSSKVGLKDNATNRKSSKISSSIREINELSVQSNAESSNNLSSLTQKSRQDSSAKSKLSKNVATGLQASGKTSNSLPGSLPKDKGENINKINSLKNGTIDIQSSKEKSGSSSALSKVKESDKNSFPSAKDGKPESISSNFNMTADVRSGNSDNTNAKKPHSRVSYKPEKWMLPQQAEDTLTQLNLAIVGHVDSGKSTLSGRLLHLLGRISQKEMHKYEREAKLQGKGSFAYAWALDESSEERERGITMTVAVAYFDTKKYHVVLLDSPGHKDFVPNMISGATQADAAILVIDASLGSFEAGMDGSKGQTREHAQLIRSFGVDRVIVAVNKMDAVAYTKDRFDFIRQHLGAFLHSCGFKDSSLSWIPMSAMENQNLVASPSDTRFKNWYGGPYLLDAIDSLQAPTREFSKPLLMPVCDVIKSTMLGQASASGKLEAGALRTGSKVLVMPSAVVGTVRSLERDSNACTVARAGDNVAVTLQGVDGNQVMAGDVLCHPDFPVAVAKHLELKVLVLDGASPILVGTQLEFHIHHAKEPARVSRILSLLDPKTGKVTKKSPRCLTAKQSAVIEVVLNESVCVVEFSSCKALGRVSLRSMGRTIAVGVVTRIIEDEG 788
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g01258 788 CDD HBS1_C_III 675 783 - -
Viun3g01258 788 Gene3D - 348 582 IPR027417 -
Viun3g01258 788 FunFam Elongation factor 1 alpha-like protein 350 581 - -
Viun3g01258 788 Pfam Elongation factor Tu domain 2 606 670 IPR004161 GO:0005525
Viun3g01258 788 CDD EF1_alpha 361 580 - -
Viun3g01258 788 Pfam Elongation factor Tu C-terminal domain 676 783 IPR004160 -
Viun3g01258 788 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 357 581 IPR000795 GO:0003924|GO:0005525
Viun3g01258 788 MobiDBLite consensus disorder prediction 307 335 - -
Viun3g01258 788 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 359 602 IPR027417 -
Viun3g01258 788 SUPERFAMILY Ran binding protein zinc finger-like 47 72 IPR036443 -
Viun3g01258 788 PANTHER TRANSLATION FACTOR 355 783 - -
Viun3g01258 788 MobiDBLite consensus disorder prediction 208 340 - -
Viun3g01258 788 SUPERFAMILY Translation proteins 580 674 IPR009000 -
Viun3g01258 788 MobiDBLite consensus disorder prediction 208 257 - -
Viun3g01258 788 Pfam Elongation factor Tu GTP binding domain 360 575 IPR000795 GO:0003924|GO:0005525
Viun3g01258 788 ProSiteProfiles Zinc finger RanBP2 type profile. 45 74 IPR001876 -
Viun3g01258 788 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 680 784 IPR009001 -
Viun3g01258 788 PRINTS GTP-binding elongation factor signature 456 467 IPR000795 GO:0003924|GO:0005525
Viun3g01258 788 PRINTS GTP-binding elongation factor signature 361 374 IPR000795 GO:0003924|GO:0005525
Viun3g01258 788 PRINTS GTP-binding elongation factor signature 501 510 IPR000795 GO:0003924|GO:0005525
Viun3g01258 788 PRINTS GTP-binding elongation factor signature 420 428 IPR000795 GO:0003924|GO:0005525
Viun3g01258 788 PRINTS GTP-binding elongation factor signature 440 450 IPR000795 GO:0003924|GO:0005525
Viun3g01258 788 Gene3D Translation factors 678 787 - -
Viun3g01258 788 FunFam Translation elongation factor EF-1 584 674 - -
Viun3g01258 788 CDD HBS1-like_II 587 671 - -
Viun3g01258 788 SMART zf_4 47 71 IPR001876 -
Viun3g01258 788 FunFam elongation factor 1-alpha isoform X4 678 787 - -
Viun3g01258 788 ProSitePatterns Zinc finger RanBP2-type signature. 49 68 IPR001876 -
Viun3g01258 788 Gene3D Translation factors 585 674 - -
Viun3g01258 788 MobiDBLite consensus disorder prediction 267 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g01258 Viun-Chr3 7841284 7849837 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g01258 161 786 Eukaryotic Initiation Factors Gene Family AT5G10630 60.669 0.0 753
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g01258 K14416 - gmx:100801724 1305.04