Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Viun3g01258 | ATGCCTCGCAAAGTCAGTTATGGACTCGATTTGGACGATGACTATTACTACGATGATGATTATGACGATTATGATTATGATGATGTCGATGCAGAAGGCCATGGAGGACCTGATACAAAGCAAGAGGCCATCAGGCCAGGTCTTTGGCAATGCTCCATCTGCACTTATGACAATGAAGAGAGTATGGCATTTTGTGATATATGTGGTGTTGTACGTCGACCCTTGCCTAACATTGGAACTTCCGACAGTAGTAAAACAGCTGAAGACATACACAAAATTCCTGGAGCATCCAAGTTGGCCAGGTCTCTTTTTCAATCATCACCACAACAGATTCCTAAAGAGGTTATATTATTTCCAAAGCCGGGTGATGGTTTTCTGACAGATGGCAATATCTTCTACAAGTTTGAGAATGTTCGGGGAGAATTTCATGAAATTCATAAAGATTTTAGTACTCAGAGCCATCCACACATAAAAATAGATCCTTTCAAGTTTGACGATCCATCCCCTGATGATGTCATTTTTACTGGTCTACATTCTTCCAAAGTGGGATTGAAAGACAATGCTACAAACAGAAAAAGTTCGAAAATTTCATCAAGCATCAGAGAGATAAATGAACTCTCTGTTCAATCAAATGCTGAAAGTTCAAACAACTTATCTTCCTTAACGCAAAAAAGCAGGCAGGATAGTTCAGCCAAGAGCAAGCTTTCAAAAAATGTAGCAACTGGTCTGCAAGCAAGTGGTAAAACATCAAACAGCTTGCCAGGATCTCTGCCAAAAGACAAAGGTGAAAATATTAATAAAATAAACTCTTTGAAAAATGGTACAATTGATATTCAATCGAGCAAAGAGAAGTCTGGTAGTTCGTCTGCACTGTCAAAAGTCAAGGAAAGTGATAAGAATAGTTTCCCTTCTGCCAAAGATGGAAAACCGGAAAGTATTTCCAGCAATTTCAACATGACTGCTGATGTAAGATCTGGAAATTCAGACAATACTAATGCTAAGAAACCTCATTCACGTGTTTCTTATAAGCCAGAAAAATGGATGCTACCTCAACAAGCTGAAGATACATTGACTCAGCTGAATCTTGCAATTGTTGGCCATGTTGATTCTGGAAAATCAACCCTATCTGGTAGGTTACTGCACCTATTGGGACGGATTTCCCAGAAAGAGATGCACAAGTATGAAAGGGAGGCCAAGTTACAGGGCAAGGGATCTTTTGCTTATGCTTGGGCACTAGATGAAAGCTCTGAAGAAAGAGAAAGGGGAATAACTATGACAGTTGCTGTTGCTTATTTTGACACCAAGAAATATCATGTTGTTTTGCTCGACTCTCCTGGCCATAAAGATTTTGTCCCGAACATGATTTCTGGGGCAACACAAGCAGATGCTGCAATCCTTGTTATAGATGCCTCGCTTGGTTCATTTGAAGCTGGTATGGATGGCAGCAAAGGGCAAACAAGGGAGCATGCACAACTTATCAGAAGTTTTGGTGTTGATCGGGTTATAGTTGCTGTAAACAAGATGGATGCTGTTGCGTACACCAAAGATCGGTTTGATTTTATAAGGCAGCATCTGGGAGCGTTTCTGCACTCATGTGGTTTCAAAGATTCTTCTCTATCTTGGATTCCTATGAGTGCCATGGAAAATCAAAATTTGGTGGCATCCCCTTCTGACACTCGTTTCAAAAACTGGTATGGTGGACCTTATCTGTTAGATGCGATTGACTCTCTCCAAGCTCCTACTAGAGAATTTTCAAAACCTCTACTAATGCCAGTATGTGATGTCATCAAATCAACTATGCTTGGACAGGCATCTGCTTCTGGTAAACTGGAAGCAGGAGCTCTTCGGACTGGATCTAAGGTCTTAGTTATGCCTTCAGCTGTAGTGGGAACAGTACGCTCATTGGAGCGTGACTCTAATGCCTGCACTGTTGCAAGAGCTGGAGATAATGTAGCTGTAACATTGCAAGGTGTCGATGGAAATCAGGTGATGGCAGGAGATGTACTATGCCATCCTGACTTTCCTGTTGCAGTTGCTAAGCATTTGGAGTTGAAAGTGCTAGTGTTGGATGGTGCAAGTCCAATATTGGTGGGCACACAGTTGGAGTTTCATATACACCATGCGAAGGAACCAGCTAGAGTTTCAAGAATATTGTCACTACTTGATCCCAAGACTGGTAAGGTGACCAAAAAGTCGCCTCGTTGTCTCACTGCAAAGCAAAGTGCAGTAATTGAGGTGGTTTTGAATGAGTCTGTCTGTGTGGTAGAGTTCTCTAGTTGTAAAGCTCTTGGAAGGGTGTCCCTAAGATCCATGGGAAGAACAATTGCTGTTGGAGTTGTGACAAGAATAATTGAGGACGAAGGTTAA | 2367 | 0.4157 | MPRKVSYGLDLDDDYYYDDDYDDYDYDDVDAEGHGGPDTKQEAIRPGLWQCSICTYDNEESMAFCDICGVVRRPLPNIGTSDSSKTAEDIHKIPGASKLARSLFQSSPQQIPKEVILFPKPGDGFLTDGNIFYKFENVRGEFHEIHKDFSTQSHPHIKIDPFKFDDPSPDDVIFTGLHSSKVGLKDNATNRKSSKISSSIREINELSVQSNAESSNNLSSLTQKSRQDSSAKSKLSKNVATGLQASGKTSNSLPGSLPKDKGENINKINSLKNGTIDIQSSKEKSGSSSALSKVKESDKNSFPSAKDGKPESISSNFNMTADVRSGNSDNTNAKKPHSRVSYKPEKWMLPQQAEDTLTQLNLAIVGHVDSGKSTLSGRLLHLLGRISQKEMHKYEREAKLQGKGSFAYAWALDESSEERERGITMTVAVAYFDTKKYHVVLLDSPGHKDFVPNMISGATQADAAILVIDASLGSFEAGMDGSKGQTREHAQLIRSFGVDRVIVAVNKMDAVAYTKDRFDFIRQHLGAFLHSCGFKDSSLSWIPMSAMENQNLVASPSDTRFKNWYGGPYLLDAIDSLQAPTREFSKPLLMPVCDVIKSTMLGQASASGKLEAGALRTGSKVLVMPSAVVGTVRSLERDSNACTVARAGDNVAVTLQGVDGNQVMAGDVLCHPDFPVAVAKHLELKVLVLDGASPILVGTQLEFHIHHAKEPARVSRILSLLDPKTGKVTKKSPRCLTAKQSAVIEVVLNESVCVVEFSSCKALGRVSLRSMGRTIAVGVVTRIIEDEG | 788 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Viun3g01258 | 788 | CDD | HBS1_C_III | 675 | 783 | - | - | |
Viun3g01258 | 788 | Gene3D | - | 348 | 582 | IPR027417 | - | |
Viun3g01258 | 788 | FunFam | Elongation factor 1 alpha-like protein | 350 | 581 | - | - | |
Viun3g01258 | 788 | Pfam | Elongation factor Tu domain 2 | 606 | 670 | IPR004161 | GO:0005525 | |
Viun3g01258 | 788 | CDD | EF1_alpha | 361 | 580 | - | - | |
Viun3g01258 | 788 | Pfam | Elongation factor Tu C-terminal domain | 676 | 783 | IPR004160 | - | |
Viun3g01258 | 788 | ProSiteProfiles | Translational (tr)-type guanine nucleotide-binding (G) domain profile. | 357 | 581 | IPR000795 | GO:0003924|GO:0005525 | |
Viun3g01258 | 788 | MobiDBLite | consensus disorder prediction | 307 | 335 | - | - | |
Viun3g01258 | 788 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 359 | 602 | IPR027417 | - | |
Viun3g01258 | 788 | SUPERFAMILY | Ran binding protein zinc finger-like | 47 | 72 | IPR036443 | - | |
Viun3g01258 | 788 | PANTHER | TRANSLATION FACTOR | 355 | 783 | - | - | |
Viun3g01258 | 788 | MobiDBLite | consensus disorder prediction | 208 | 340 | - | - | |
Viun3g01258 | 788 | SUPERFAMILY | Translation proteins | 580 | 674 | IPR009000 | - | |
Viun3g01258 | 788 | MobiDBLite | consensus disorder prediction | 208 | 257 | - | - | |
Viun3g01258 | 788 | Pfam | Elongation factor Tu GTP binding domain | 360 | 575 | IPR000795 | GO:0003924|GO:0005525 | |
Viun3g01258 | 788 | ProSiteProfiles | Zinc finger RanBP2 type profile. | 45 | 74 | IPR001876 | - | |
Viun3g01258 | 788 | SUPERFAMILY | EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain | 680 | 784 | IPR009001 | - | |
Viun3g01258 | 788 | PRINTS | GTP-binding elongation factor signature | 456 | 467 | IPR000795 | GO:0003924|GO:0005525 | |
Viun3g01258 | 788 | PRINTS | GTP-binding elongation factor signature | 361 | 374 | IPR000795 | GO:0003924|GO:0005525 | |
Viun3g01258 | 788 | PRINTS | GTP-binding elongation factor signature | 501 | 510 | IPR000795 | GO:0003924|GO:0005525 | |
Viun3g01258 | 788 | PRINTS | GTP-binding elongation factor signature | 420 | 428 | IPR000795 | GO:0003924|GO:0005525 | |
Viun3g01258 | 788 | PRINTS | GTP-binding elongation factor signature | 440 | 450 | IPR000795 | GO:0003924|GO:0005525 | |
Viun3g01258 | 788 | Gene3D | Translation factors | 678 | 787 | - | - | |
Viun3g01258 | 788 | FunFam | Translation elongation factor EF-1 | 584 | 674 | - | - | |
Viun3g01258 | 788 | CDD | HBS1-like_II | 587 | 671 | - | - | |
Viun3g01258 | 788 | SMART | zf_4 | 47 | 71 | IPR001876 | - | |
Viun3g01258 | 788 | FunFam | elongation factor 1-alpha isoform X4 | 678 | 787 | - | - | |
Viun3g01258 | 788 | ProSitePatterns | Zinc finger RanBP2-type signature. | 49 | 68 | IPR001876 | - | |
Viun3g01258 | 788 | Gene3D | Translation factors | 585 | 674 | - | - | |
Viun3g01258 | 788 | MobiDBLite | consensus disorder prediction | 267 | 298 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Viun3g01258 | Viun-Chr3 | 7841284 | 7849837 | Dispersed/Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Viun3g01258 | 161 | 786 | Eukaryotic Initiation Factors Gene Family | AT5G10630 | 60.669 | 0.0 | 753 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Viun3g01258 | K14416 | - | gmx:100801724 | 1305.04 |