Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g01257 ATGCCTCGCAAAGTCAGTTATGGACTCGATTTGGACGATGACTATTACTACGATGATGATTATGACGATTATGATTATGATGATGTCGATGCAGAAGGCCATGGAGGACCTGATACAAAGCAAGAGGCCATCAGGCCAGGTCTTTGGCAATGCTCCATCTGCACTTATGACAATGAAGAGAGTATGGCATTTTGTGATATATGTGGTGTTGTACGTCGACCCTTGCCTAACATTGGAACTTCCGACAGTAGTAAAACAGCTGAAGACATACACAAAATTCCTGGAGCATCCAAGTTGGCCAGGTCTCTTTTTCAATCATCACCACAACAGATTCCTAAAGAGGTTATATTATTTCCAAAGCCGGGTGATGGTTTTCTGACAGATGGCAATATCTTCTACAAGTTTGAGAATGTTCGGGGAGAATTTCATGAAATTCATAAAGATTTTAGTACTCAGAGCCATCCACACATAAAAATAGACAATGCTACAAACAGAAAAAGTTCGAAAATTTCATCAAGCATCAGAGAGATAAATGAACTCTCTGTTCAATCAAATGCTGAAAGTTCAAACAACTTATCTTCCTTAACGCAAAAAAGCAGGCAGGATAGTTCAGCCAAGAGCAAGCTTTCAAAAAATGTAGCAACTGGTCTGCAAGCAAGTGGTAAAACATCAAACAGCTTGCCAGGATCTCTGCCAAAAGACAAAGGTGAAAATATTAATAAAATAAACTCTTTGAAAAATGGTACAATTGATATTCAATCGAGCAAAGAGAAGTCTGGTAGTTCGTCTGCACTGTCAAAAGTCAAGGAAAGTGATAAGAATAGTTTCCCTTCTGCCAAAGATGGAAAACCGGAAAGTATTTCCAGCAATTTCAACATGACTGCTGATGTAAGATCTGGAAATTCAGACAATACTAATGCTAAGAAACCTCATTCACGTGTTTCTTATAAGCCAGAAAAATGGATGCTACCTCAACAAGCTGAAGATACATTGACTCAGCTGAATCTTGCAATTGTTGGCCATGTTGATTCTGGAAAATCAACCCTATCTGGTAGGTTACTGCACCTATTGGGACGGATTTCCCAGAAAGAGATGCACAAGTATGAAAGGGAGGCCAAGTTACAGGGCAAGGGATCTTTTGCTTATGCTTGGGCACTAGATGAAAGCTCTGAAGAAAGAGAAAGGGGAATAACTATGACAGTTGCTGTTGCTTATTTTGACACCAAGAAATATCATGTTGTTTTGCTCGACTCTCCTGGCCATAAAGATTTTGTCCCGAACATGATTTCTGGGGCAACACAAGCAGATGCTGCAATCCTTGTTATAGATGCCTCGCTTGGTTCATTTGAAGCTGGTATGGATGGCAGCAAAGGGCAAACAAGGGAGCATGCACAACTTATCAGAAGTTTTGGTGTTGATCGGGTTATAGTTGCTGTAAACAAGATGGATGCTGTTGCGTACACCAAAGATCGGTTTGATTTTATAAGGCAGCATCTGGGAGCGTTTCTGCACTCATGTGGTTTCAAAGATTCTTCTCTATCTTGGATTCCTATGAGTGCCATGGAAAATCAAAATTTGGTGGCATCCCCTTCTGACACTCGTTTCAAAAACTGGTATGGTGGACCTTATCTGTTAGATGCGATTGACTCTCTCCAAGCTCCTACTAGAGAATTTTCAAAACCTCTACTAATGCCAGTATGTGATGTCATCAAATCAACTATGCTTGGACAGGCATCTGCTTCTGGTAAACTGGAAGCAGGAGCTCTTCGGACTGGATCTAAGGTCTTAGTTATGCCTTCAGCTGTAGTGGGAACAGTACGCTCATTGGAGCGTGACTCTAATGCCTGCACTGTTGCAAGAGCTGGAGATAATGTAGCTGTAACATTGCAAGGTGTCGATGGAAATCAGGTGATGGCAGGAGATGTACTATGCCATCCTGACTTTCCTGTTGCAGTTGCTAAGCATTTGGAGTTGAAAGTGCTAGTGTTGGATGGTGCAAGTCCAATATTGGTGGGCACACAGTTGGAGTTTCATATACACCATGCGAAGGAACCAGCTAGAGTTTCAAGAATATTGTCACTACTTGATCCCAAGACTGGTAAGGTGACCAAAAAGTCGCCTCGTTGTCTCACTGCAAAGCAAAGTGCAGTAATTGAGGTGGTTTTGAATGAGTCTGTCTGTGTGGTAGAGTTCTCTAGTTGTAAAGCTCTTGGAAGGGTGTCCCTAAGATCCATGGGAAGAACAATTGCTGTTGGAGTTGTGACAAGAATAATTGAGGACGAAGGTTAA 2289 0.4163 MPRKVSYGLDLDDDYYYDDDYDDYDYDDVDAEGHGGPDTKQEAIRPGLWQCSICTYDNEESMAFCDICGVVRRPLPNIGTSDSSKTAEDIHKIPGASKLARSLFQSSPQQIPKEVILFPKPGDGFLTDGNIFYKFENVRGEFHEIHKDFSTQSHPHIKIDNATNRKSSKISSSIREINELSVQSNAESSNNLSSLTQKSRQDSSAKSKLSKNVATGLQASGKTSNSLPGSLPKDKGENINKINSLKNGTIDIQSSKEKSGSSSALSKVKESDKNSFPSAKDGKPESISSNFNMTADVRSGNSDNTNAKKPHSRVSYKPEKWMLPQQAEDTLTQLNLAIVGHVDSGKSTLSGRLLHLLGRISQKEMHKYEREAKLQGKGSFAYAWALDESSEERERGITMTVAVAYFDTKKYHVVLLDSPGHKDFVPNMISGATQADAAILVIDASLGSFEAGMDGSKGQTREHAQLIRSFGVDRVIVAVNKMDAVAYTKDRFDFIRQHLGAFLHSCGFKDSSLSWIPMSAMENQNLVASPSDTRFKNWYGGPYLLDAIDSLQAPTREFSKPLLMPVCDVIKSTMLGQASASGKLEAGALRTGSKVLVMPSAVVGTVRSLERDSNACTVARAGDNVAVTLQGVDGNQVMAGDVLCHPDFPVAVAKHLELKVLVLDGASPILVGTQLEFHIHHAKEPARVSRILSLLDPKTGKVTKKSPRCLTAKQSAVIEVVLNESVCVVEFSSCKALGRVSLRSMGRTIAVGVVTRIIEDEG 762
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g01257 762 MobiDBLite consensus disorder prediction 281 309 - -
Viun3g01257 762 Pfam Elongation factor Tu C-terminal domain 650 757 IPR004160 -
Viun3g01257 762 MobiDBLite consensus disorder prediction 181 231 - -
Viun3g01257 762 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 331 555 IPR000795 GO:0003924|GO:0005525
Viun3g01257 762 Gene3D Translation factors 652 761 - -
Viun3g01257 762 FunFam Translation elongation factor EF-1 558 648 - -
Viun3g01257 762 CDD HBS1-like_II 561 645 - -
Viun3g01257 762 Pfam Elongation factor Tu GTP binding domain 334 549 IPR000795 GO:0003924|GO:0005525
Viun3g01257 762 CDD HBS1_C_III 649 757 - -
Viun3g01257 762 SUPERFAMILY Translation proteins 554 648 IPR009000 -
Viun3g01257 762 CDD EF1_alpha 335 554 - -
Viun3g01257 762 MobiDBLite consensus disorder prediction 181 314 - -
Viun3g01257 762 ProSiteProfiles Zinc finger RanBP2 type profile. 45 74 IPR001876 -
Viun3g01257 762 PRINTS GTP-binding elongation factor signature 475 484 IPR000795 GO:0003924|GO:0005525
Viun3g01257 762 PRINTS GTP-binding elongation factor signature 430 441 IPR000795 GO:0003924|GO:0005525
Viun3g01257 762 PRINTS GTP-binding elongation factor signature 414 424 IPR000795 GO:0003924|GO:0005525
Viun3g01257 762 PRINTS GTP-binding elongation factor signature 335 348 IPR000795 GO:0003924|GO:0005525
Viun3g01257 762 PRINTS GTP-binding elongation factor signature 394 402 IPR000795 GO:0003924|GO:0005525
Viun3g01257 762 MobiDBLite consensus disorder prediction 241 272 - -
Viun3g01257 762 SMART zf_4 47 71 IPR001876 -
Viun3g01257 762 PANTHER TRANSLATION FACTOR 329 757 - -
Viun3g01257 762 SUPERFAMILY Ran binding protein zinc finger-like 47 72 IPR036443 -
Viun3g01257 762 Pfam Elongation factor Tu domain 2 580 644 IPR004161 GO:0005525
Viun3g01257 762 ProSitePatterns Zinc finger RanBP2-type signature. 49 68 IPR001876 -
Viun3g01257 762 Gene3D - 322 556 IPR027417 -
Viun3g01257 762 FunFam elongation factor 1-alpha isoform X4 652 761 - -
Viun3g01257 762 FunFam Elongation factor 1 alpha-like protein 324 555 - -
Viun3g01257 762 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 333 576 IPR027417 -
Viun3g01257 762 Gene3D Translation factors 559 648 - -
Viun3g01257 762 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 654 758 IPR009001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g01257 Viun-Chr3 7841284 7849837 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g01257 258 760 Eukaryotic Initiation Factors Gene Family AT5G10630 69.444 0.0 737
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g01257 K14416 - gmx:100801724 1254.58