Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g01256 ATGCCTCGCAAAGTCAGTTATGGACTCGATTTGGACGATGACTATTACTACGATGATGATTATGACGATTATGATTATGATGATGTCGATGCAGAAGGCCATGGAGGACCTGATACAAAGCAAGAGGCCATCAGGCCAGGTCTTTGGCAATGCTCCATCTGCACTTATGACAATGAAGAGAGTATGGCATTTTGTGATATATGTGGTGTTGTACGTCGACCCTTGCCTAACATTGGAACTTCCGACAGTAGTAAAACAGATCCTTTCAAGTTTGACGATCCATCCCCTGATGATGTCATTTTTACTGGTCTACATTCTTCCAAAGTGGGATTGAAAGACAATGCTACAAACAGAAAAAGTTCGAAAATTTCATCAAGCATCAGAGAGATAAATGAACTCTCTGTTCAATCAAATGCTGAAAGTTCAAACAACTTATCTTCCTTAACGCAAAAAAGCAGGCAGGATAGTTCAGCCAAGAGCAAGCTTTCAAAAAATGTAGCAACTGGTCTGCAAGCAAGTGGTAAAACATCAAACAGCTTGCCAGGATCTCTGCCAAAAGACAAAGGTGAAAATATTAATAAAATAAACTCTTTGAAAAATGGTACAATTGATATTCAATCGAGCAAAGAGAAGTCTGGTAGTTCGTCTGCACTGTCAAAAGTCAAGGAAAGTGATAAGAATAGTTTCCCTTCTGCCAAAGATGGAAAACCGGAAAGTATTTCCAGCAATTTCAACATGACTGCTGATGTAAGATCTGGAAATTCAGACAATACTAATGCTAAGAAACCTCATTCACGTGTTTCTTATAAGCCAGAAAAATGGATGCTACCTCAACAAGCTGAAGATACATTGACTCAGCTGAATCTTGCAATTGTTGGCCATGTTGATTCTGGAAAATCAACCCTATCTGGTAGGTTACTGCACCTATTGGGACGGATTTCCCAGAAAGAGATGCACAAGTATGAAAGGGAGGCCAAGTTACAGGGCAAGGGATCTTTTGCTTATGCTTGGGCACTAGATGAAAGCTCTGAAGAAAGAGAAAGGGGAATAACTATGACAGTTGCTGTTGCTTATTTTGACACCAAGAAATATCATGTTGTTTTGCTCGACTCTCCTGGCCATAAAGATTTTGTCCCGAACATGATTTCTGGGGCAACACAAGCAGATGCTGCAATCCTTGTTATAGATGCCTCGCTTGGTTCATTTGAAGCTGGTATGGATGGCAGCAAAGGGCAAACAAGGGAGCATGCACAACTTATCAGAAGTTTTGGTGTTGATCGGGTTATAGTTGCTGTAAACAAGATGGATGCTGTTGCGTACACCAAAGATCGGTTTGATTTTATAAGGCAGCATCTGGGAGCGTTTCTGCACTCATGTGGTTTCAAAGATTCTTCTCTATCTTGGATTCCTATGAGTGCCATGGAAAATCAAAATTTGGTGGCATCCCCTTCTGACACTCGTTTCAAAAACTGGTATGGTGGACCTTATCTGTTAGATGCGATTGACTCTCTCCAAGCTCCTACTAGAGAATTTTCAAAACCTCTACTAATGCCAGTATGTGATGTCATCAAATCAACTATGCTTGGACAGGCATCTGCTTCTGGTAAACTGGAAGCAGGAGCTCTTCGGACTGGATCTAAGGTCTTAGTTATGCCTTCAGCTGTAGTGGGAACAGTACGCTCATTGGAGCGTGACTCTAATGCCTGCACTGTTGCAAGAGCTGGAGATAATGTAGCTGTAACATTGCAAGGTGTCGATGGAAATCAGGTGATGGCAGGAGATGTACTATGCCATCCTGACTTTCCTGTTGCAGTTGCTAAGCATTTGGAGTTGAAAGTGCTAGTGTTGGATGGTGCAAGTCCAATATTGGTGGGCACACAGTTGGAGTTTCATATACACCATGCGAAGGAACCAGCTAGAGTTTCAAGAATATTGTCACTACTTGATCCCAAGACTGGTAAGGTGACCAAAAAGTCGCCTCGTTGTCTCACTGCAAAGCAAAGTGCAGTAATTGAGGTGGTTTTGAATGAGTCTGTCTGTGTGGTAGAGTTCTCTAGTTGTAAAGCTCTTGGAAGGGTGTCCCTAAGATCCATGGGAAGAACAATTGCTGTTGGAGTTGTGACAAGAATAATTGAGGACGAAGGTTAA 2148 0.4195 MPRKVSYGLDLDDDYYYDDDYDDYDYDDVDAEGHGGPDTKQEAIRPGLWQCSICTYDNEESMAFCDICGVVRRPLPNIGTSDSSKTDPFKFDDPSPDDVIFTGLHSSKVGLKDNATNRKSSKISSSIREINELSVQSNAESSNNLSSLTQKSRQDSSAKSKLSKNVATGLQASGKTSNSLPGSLPKDKGENINKINSLKNGTIDIQSSKEKSGSSSALSKVKESDKNSFPSAKDGKPESISSNFNMTADVRSGNSDNTNAKKPHSRVSYKPEKWMLPQQAEDTLTQLNLAIVGHVDSGKSTLSGRLLHLLGRISQKEMHKYEREAKLQGKGSFAYAWALDESSEERERGITMTVAVAYFDTKKYHVVLLDSPGHKDFVPNMISGATQADAAILVIDASLGSFEAGMDGSKGQTREHAQLIRSFGVDRVIVAVNKMDAVAYTKDRFDFIRQHLGAFLHSCGFKDSSLSWIPMSAMENQNLVASPSDTRFKNWYGGPYLLDAIDSLQAPTREFSKPLLMPVCDVIKSTMLGQASASGKLEAGALRTGSKVLVMPSAVVGTVRSLERDSNACTVARAGDNVAVTLQGVDGNQVMAGDVLCHPDFPVAVAKHLELKVLVLDGASPILVGTQLEFHIHHAKEPARVSRILSLLDPKTGKVTKKSPRCLTAKQSAVIEVVLNESVCVVEFSSCKALGRVSLRSMGRTIAVGVVTRIIEDEG 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g01256 715 Gene3D - 275 509 IPR027417 -
Viun3g01256 715 FunFam elongation factor 1-alpha isoform X4 605 714 - -
Viun3g01256 715 PRINTS GTP-binding elongation factor signature 367 377 IPR000795 GO:0003924|GO:0005525
Viun3g01256 715 PRINTS GTP-binding elongation factor signature 428 437 IPR000795 GO:0003924|GO:0005525
Viun3g01256 715 PRINTS GTP-binding elongation factor signature 383 394 IPR000795 GO:0003924|GO:0005525
Viun3g01256 715 PRINTS GTP-binding elongation factor signature 347 355 IPR000795 GO:0003924|GO:0005525
Viun3g01256 715 PRINTS GTP-binding elongation factor signature 288 301 IPR000795 GO:0003924|GO:0005525
Viun3g01256 715 MobiDBLite consensus disorder prediction 194 225 - -
Viun3g01256 715 Pfam Elongation factor Tu GTP binding domain 287 502 IPR000795 GO:0003924|GO:0005525
Viun3g01256 715 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 607 711 IPR009001 -
Viun3g01256 715 SUPERFAMILY Translation proteins 507 601 IPR009000 -
Viun3g01256 715 SUPERFAMILY Ran binding protein zinc finger-like 47 72 IPR036443 -
Viun3g01256 715 Pfam Elongation factor Tu domain 2 533 597 IPR004161 GO:0005525
Viun3g01256 715 CDD HBS1-like_II 514 598 - -
Viun3g01256 715 Gene3D Translation factors 605 714 - -
Viun3g01256 715 FunFam Translation elongation factor EF-1 511 601 - -
Viun3g01256 715 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 284 508 IPR000795 GO:0003924|GO:0005525
Viun3g01256 715 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 286 529 IPR027417 -
Viun3g01256 715 PANTHER TRANSLATION FACTOR 282 710 - -
Viun3g01256 715 ProSiteProfiles Zinc finger RanBP2 type profile. 45 74 IPR001876 -
Viun3g01256 715 MobiDBLite consensus disorder prediction 135 184 - -
Viun3g01256 715 Gene3D Translation factors 512 601 - -
Viun3g01256 715 SMART zf_4 47 71 IPR001876 -
Viun3g01256 715 Pfam Elongation factor Tu C-terminal domain 603 710 IPR004160 -
Viun3g01256 715 ProSitePatterns Zinc finger RanBP2-type signature. 49 68 IPR001876 -
Viun3g01256 715 FunFam Elongation factor 1 alpha-like protein 277 508 - -
Viun3g01256 715 MobiDBLite consensus disorder prediction 135 267 - -
Viun3g01256 715 CDD EF1_alpha 288 507 - -
Viun3g01256 715 CDD HBS1_C_III 602 710 - -
Viun3g01256 715 MobiDBLite consensus disorder prediction 234 262 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g01256 Viun-Chr3 7841284 7849837 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g01256 47 713 Eukaryotic Initiation Factors Gene Family AT5G10630 60.239 0.0 804
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g01256 K14416 - gmx:100798594 1174.46