Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g01255 ATGCCTCGCAAAGTCAGTTATGGACTCGATTTGGACGATGACTATTACTACGATGATGATTATGACGATTATGATTATGATGATGTCGATGCAGAAGGCCATGGAGGACCTGATACAAAGCAAGAGGCCATCAGGCCAGGTCTTTGGCAATGCTCCATCTGCACTTATGACAATGAAGAGAGTATGGCATTTTGTGATATATGTGGTGTTGTACGTCGACCCTTGCCTAACATTGGAACTTCCGACAGTAGTAAAACAGACAATGCTACAAACAGAAAAAGTTCGAAAATTTCATCAAGCATCAGAGAGATAAATGAACTCTCTGTTCAATCAAATGCTGAAAGTTCAAACAACTTATCTTCCTTAACGCAAAAAAGCAGGCAGGATAGTTCAGCCAAGAGCAAGCTTTCAAAAAATGTAGCAACTGGTCTGCAAGCAAGTGGTAAAACATCAAACAGCTTGCCAGGATCTCTGCCAAAAGACAAAGGTGAAAATATTAATAAAATAAACTCTTTGAAAAATGGTACAATTGATATTCAATCGAGCAAAGAGAAGTCTGGTAGTTCGTCTGCACTGTCAAAAGTCAAGGAAAGTGATAAGAATAGTTTCCCTTCTGCCAAAGATGGAAAACCGGAAAGTATTTCCAGCAATTTCAACATGACTGCTGATGTAAGATCTGGAAATTCAGACAATACTAATGCTAAGAAACCTCATTCACGTGTTTCTTATAAGCCAGAAAAATGGATGCTACCTCAACAAGCTGAAGATACATTGACTCAGCTGAATCTTGCAATTGTTGGCCATGTTGATTCTGGAAAATCAACCCTATCTGGTAGGTTACTGCACCTATTGGGACGGATTTCCCAGAAAGAGATGCACAAGTATGAAAGGGAGGCCAAGTTACAGGGCAAGGGATCTTTTGCTTATGCTTGGGCACTAGATGAAAGCTCTGAAGAAAGAGAAAGGGGAATAACTATGACAGTTGCTGTTGCTTATTTTGACACCAAGAAATATCATGTTGTTTTGCTCGACTCTCCTGGCCATAAAGATTTTGTCCCGAACATGATTTCTGGGGCAACACAAGCAGATGCTGCAATCCTTGTTATAGATGCCTCGCTTGGTTCATTTGAAGCTGGTATGGATGGCAGCAAAGGGCAAACAAGGGAGCATGCACAACTTATCAGAAGTTTTGGTGTTGATCGGGTTATAGTTGCTGTAAACAAGATGGATGCTGTTGCGTACACCAAAGATCGGTTTGATTTTATAAGGCAGCATCTGGGAGCGTTTCTGCACTCATGTGGTTTCAAAGATTCTTCTCTATCTTGGATTCCTATGAGTGCCATGGAAAATCAAAATTTGGTGGCATCCCCTTCTGACACTCGTTTCAAAAACTGGTATGGTGGACCTTATCTGTTAGATGCGATTGACTCTCTCCAAGCTCCTACTAGAGAATTTTCAAAACCTCTACTAATGCCAGTATGTGATGTCATCAAATCAACTATGCTTGGACAGGCATCTGCTTCTGGTAAACTGGAAGCAGGAGCTCTTCGGACTGGATCTAAGGTCTTAGTTATGCCTTCAGCTGTAGTGGGAACAGTACGCTCATTGGAGCGTGACTCTAATGCCTGCACTGTTGCAAGAGCTGGAGATAATGTAGCTGTAACATTGCAAGGTGTCGATGGAAATCAGGTGATGGCAGGAGATGTACTATGCCATCCTGACTTTCCTGTTGCAGTTGCTAAGCATTTGGAGTTGAAAGTGCTAGTGTTGGATGGTGCAAGTCCAATATTGGTGGGCACACAGTTGGAGTTTCATATACACCATGCGAAGGAACCAGCTAGAGTTTCAAGAATATTGTCACTACTTGATCCCAAGACTGGTAAGGTGACCAAAAAGTCGCCTCGTTGTCTCACTGCAAAGCAAAGTGCAGTAATTGAGGTGGTTTTGAATGAGTCTGTCTGTGTGGTAGAGTTCTCTAGTTGTAAAGCTCTTGGAAGGGTGTCCCTAAGATCCATGGGAAGAACAATTGCTGTTGGAGTTGTGACAAGAATAATTGAGGACGAAGGTTAA 2070 0.4203 MPRKVSYGLDLDDDYYYDDDYDDYDYDDVDAEGHGGPDTKQEAIRPGLWQCSICTYDNEESMAFCDICGVVRRPLPNIGTSDSSKTDNATNRKSSKISSSIREINELSVQSNAESSNNLSSLTQKSRQDSSAKSKLSKNVATGLQASGKTSNSLPGSLPKDKGENINKINSLKNGTIDIQSSKEKSGSSSALSKVKESDKNSFPSAKDGKPESISSNFNMTADVRSGNSDNTNAKKPHSRVSYKPEKWMLPQQAEDTLTQLNLAIVGHVDSGKSTLSGRLLHLLGRISQKEMHKYEREAKLQGKGSFAYAWALDESSEERERGITMTVAVAYFDTKKYHVVLLDSPGHKDFVPNMISGATQADAAILVIDASLGSFEAGMDGSKGQTREHAQLIRSFGVDRVIVAVNKMDAVAYTKDRFDFIRQHLGAFLHSCGFKDSSLSWIPMSAMENQNLVASPSDTRFKNWYGGPYLLDAIDSLQAPTREFSKPLLMPVCDVIKSTMLGQASASGKLEAGALRTGSKVLVMPSAVVGTVRSLERDSNACTVARAGDNVAVTLQGVDGNQVMAGDVLCHPDFPVAVAKHLELKVLVLDGASPILVGTQLEFHIHHAKEPARVSRILSLLDPKTGKVTKKSPRCLTAKQSAVIEVVLNESVCVVEFSSCKALGRVSLRSMGRTIAVGVVTRIIEDEG 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g01255 689 FunFam Translation elongation factor EF-1 485 575 - -
Viun3g01255 689 SUPERFAMILY Ran binding protein zinc finger-like 47 72 IPR036443 -
Viun3g01255 689 MobiDBLite consensus disorder prediction 76 241 - -
Viun3g01255 689 Pfam Elongation factor Tu domain 2 507 571 IPR004161 GO:0005525
Viun3g01255 689 CDD EF1_alpha 262 481 - -
Viun3g01255 689 CDD HBS1_C_III 576 684 - -
Viun3g01255 689 Pfam Elongation factor Tu C-terminal domain 577 684 IPR004160 -
Viun3g01255 689 Gene3D Translation factors 579 688 - -
Viun3g01255 689 FunFam Elongation factor 1 alpha-like protein 251 482 - -
Viun3g01255 689 Pfam Elongation factor Tu GTP binding domain 261 476 IPR000795 GO:0003924|GO:0005525
Viun3g01255 689 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 260 503 IPR027417 -
Viun3g01255 689 Gene3D Translation factors 486 575 - -
Viun3g01255 689 PANTHER TRANSLATION FACTOR 256 684 - -
Viun3g01255 689 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 581 685 IPR009001 -
Viun3g01255 689 ProSiteProfiles Zinc finger RanBP2 type profile. 45 74 IPR001876 -
Viun3g01255 689 Gene3D - 249 483 IPR027417 -
Viun3g01255 689 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 258 482 IPR000795 GO:0003924|GO:0005525
Viun3g01255 689 CDD HBS1-like_II 488 572 - -
Viun3g01255 689 PRINTS GTP-binding elongation factor signature 357 368 IPR000795 GO:0003924|GO:0005525
Viun3g01255 689 PRINTS GTP-binding elongation factor signature 341 351 IPR000795 GO:0003924|GO:0005525
Viun3g01255 689 PRINTS GTP-binding elongation factor signature 321 329 IPR000795 GO:0003924|GO:0005525
Viun3g01255 689 PRINTS GTP-binding elongation factor signature 262 275 IPR000795 GO:0003924|GO:0005525
Viun3g01255 689 PRINTS GTP-binding elongation factor signature 402 411 IPR000795 GO:0003924|GO:0005525
Viun3g01255 689 FunFam elongation factor 1-alpha isoform X4 579 688 - -
Viun3g01255 689 MobiDBLite consensus disorder prediction 208 236 - -
Viun3g01255 689 SMART zf_4 47 71 IPR001876 -
Viun3g01255 689 MobiDBLite consensus disorder prediction 168 199 - -
Viun3g01255 689 ProSitePatterns Zinc finger RanBP2-type signature. 49 68 IPR001876 -
Viun3g01255 689 MobiDBLite consensus disorder prediction 77 158 - -
Viun3g01255 689 SUPERFAMILY Translation proteins 481 575 IPR009000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g01255 Viun-Chr3 7841284 7849837 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g01255 47 687 Eukaryotic Initiation Factors Gene Family AT5G10630 60.280 0.0 780
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g01255 K14416 - gmx:100798594 1127.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun6g02496 6 29789643 29792703 Viun3g01255 3 7841284 7849837 PCT