Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g01213 ATGCGACATGGAGGTTTTGATTTTGTTCAATATGCAATAAATATTGTGGGTCCTGAATTTTCAACTCCTCAAGATGAAGCAATATACGAAAAATTTGAAGATATTGTCCAATCTAAAGATGGAGATGAAGTTTCATACAAGGAGCTGCGAGGTTTGGTTCGATTAAGGGATTTTATCAGCCTCATGTTGACTTATCCAGTGAAGTTAGAAGAGGACGGTGTATTAAGATCCTGGATTAGTGCATTTCCGGAATGGAAAGCTGAGTTATTTTCCACTGGTGGTTATCCTGTGATTTACAAACCATGGAGTCTACTAACTGAGAAGGCACTGAGATGCATGAAAGGATTCATGCCTGTGGAAATAATGGCTGAAATAGAAAGTGGTGAGAGATCCATCTTCAACCGCGATAATGATGTAATACTAGAAGGCCTACTCCCCCTAATTGTTGATCTTGCAGTTAACCAACTAATTCAAACTTTGTTTTCTGGAGATTACTGTGCGCGCTATATCAGATTGTTGACCAGAAACTCTGCTGAAAAAGAATCTGTAGTGAGCAAAATAGTTTCAGCCTTGGAAGATAAACACAACTTGTTTGGAATTGACAAAGATTTTCTTATGGCCGTATGGATCAATGCTTTGACACGTGAGACTGATGCGGAGGTTCAAGTTCAAGAAGAAATCAATAAGATCATGGGAAGTATTTCTATAACAGAAGGTGATGACATGTTAACCACACTAGACACCGACGAAAAGAAGAGGAGAAATAGGCTGTTGGTAATTGTAGTGGATGCAGATAGCAACAGGAAGAAGCTGGACCTCCAAAAAGTGCAATTTCCAACTGGGATAGTGGTGTTGATAACAACTGAGTCTTCAACACAGGCGGTGATGGATGATGGAATTGCATCCACAATGGATTTGAATATTTGGACCCAGGATCATCTGTTGCCTTGGAAACTCTTCAATACCTATGTGGGAAGTTGTATCAGCTGTAGCACAGTGGGTTCATCAACGACCATTCAGACAATAGCGGTGGAAATAGTCAAGAAAATCCATGGTCATCTCCTTGCCATTGTCCTTGTGGCAAAACATCTTAGGAATGTGAAAGATGACAAATACTGGGAGCTTGTACTTGACAAATTAAGCAGTCGAAACCCTTTCTATGATTATCAAGATTGTGACCGAATTGGCATTAGCAGAGTCATGGTCAATGCATTTGTAAATATTATTTGGGAAGACATCGATGATGAACTAAAGCTTTGTCTCCAACTCAGTTTACCTGTTCGCAACATTAAAAATGGGGTGAGAGATGATATCTTGGTTTCTTATTGGGCTAATATATTACGATACACACAAGAGGTTGGTGAATACAAAAGACAGTTACAATATTACCTCGAGGAGCTTCTAGACTGTTTTGTCTTGTTGGAATTTGAAAGTGGAGACGTCTATTTGCCAATAGAAGCCTATGATATAATTAAATCATTACACATCTCACAACCTTCCATCATAAGACATAGTGCATTAGGATTGACGGAGATTGGACAATGGCATAGTCTTATTCAGCTAGAATTGATTGACAATAAAATATGTGAACTACCACAATCACCAGACTGCCCTAAACTCAAAGTGTTGTTGTTGCAGGGCAATGCCGATTTATTGGATATCCCTGATTCATTTTTCGACCACATGCCTCTACTTCAACACTTGGACTTATCCTACACTAGTATAAGGGATCTGCCCCCTTCTCTCACCAAATTGATCCAACTTAAAAAATTATATCTTAAAGGTTGTGATCTCTTCATGGAAATATCCCCTCAAATTTTTCAGCTGAAGAATCTCGAAGAGCTTGATCTTGACGGGACTTTGATAACCCATTTACCAAAAGACATTCAAGAATTGATCAACCTGCAACGCTTAGCCCTATGCTTTGATGCATACCATCATGTACTTAGTCGTGGTAAAAAAGGCATGCAGATTTCTAACACATTGATAATTCCTCCCGGAGTGATATCAAATCTTACTCGGCTGAATTATCTAAGCCTTGACGTCGACCCTGAAGATGAGCAATGGACCGAGAACGTCAATAGCGTATTGCTGGAAATTTTGGGACTAGAGAAGTTGAAGACGGTGAGTATATATGTCCCGGAGACTGATCTCTTGGAACTCATACCCGGCACAAAATCTCTCAATTTCCGATTGGTTGTTGGTCATCACATACGGCGTCTAATATCTCGTGTACCACCTGAACTAGAGACAAAATTCAAACAGTGTAACTATAGCATGAAGTTTGTTAATGGTGTAAATGTTCCCAATGGAGTGAAAATGAATCTTGAACGCTTCAAGGCCTTGTACCTTGATCGACATATGACCATCAAGAGTCTCTCGGATTTCAATTTGAGCAACTTAGGCAGGTTAAAAGTTTGCATATTGGCGGAATGTAATGAAATGGAAACAATTTTCGATGGAGGTAAGTCATCTGATGAACCTGTTTCTCTGATGTTGGAGTTCTTGAGTGTATTTTATATGAAGAATTTAAGAAACATTTGCCAAGAATGTTGTCCCTTCTCCTCCATAAAGTATATAGCATTACACACTTGTCCCATGTTAACTACTATCTTCACCATCAGTACTTTTATCAGCATTCCCCTTTTGGAAGAGATTAGTGTTGAAGACTGTCCAAAAGTAACCACCCTAATAATTCATGACTCACCAGAAGAACGTAGATCAGCGTTTTCCCTCCCCAAGTTGAGAGTGATATCGCTTCTTTATCTTCCCAACTTGGTCAATATTTTTAATGGCCTGCGTGTTGAACATGCTTTAGAAGAAATGATATTTTATTGTTGCCCAAAACTCCAAAGTCTTTCCAGATCGGAGTTGCCATGGGAATATTTGAAGTTCATTAAAGGAGAAAGCATGTGGTGGGAAGCATTGGACTGGAGTGTATCAGAGTGGGGTTATGCTGGTCGACCCAAATTTCTTGAGCAATTTTTTAAACCAATTACAATGGAGGCTGACATGAAGAGCCCACCAGCTGCACATCAAGAGACTCAACTAAATGAATATCACGGTACCATGTATCAGGGAGTTTCAAGTTCTACCGAGTTGATGACGAAGCTACATTTAGAAACACCTCTTTTGTCGTTATCGGGTAGTAAAGAAGGTGAAGCCCAAAAGCGGAAAGCCGTTATTGAGCCAATAATTTTTTCACCACCGTTGTTAAAAAGGAAACCAAACGAGAGTTTTCGGAGAAGAACACCTCAACCATCTATGAAAGTGATACGTACTAAGAATTTAGATGATGGATATTCCTGGAGAAAATATGGGCAGAAGGAGATTCTTGGAGCTAAGTATACGAGAGGATATTACCGCTGCACATATAGAAATACACATGGGTGCCAAGCAACCAAACAAGTTCAAAGGTTTGATGAGAAACCAACAACATTTGAGGTAAATTACAGAGGAACTCATACGTGCACCCAAAAACAGGATTTGATCGCTGAAAGTGGGGATGAGGAAGTATTCGAAGATTTTATTGCAAAACCAGATTCTTCATCAGCTACCAACAAAAATGATATTTTCTCTTGGGAGGAAATAACAGCTGAACTAGAAGAACCAAGTCAGATATCATTCGGATCAAGTGGGGTTGGATCAAGTGAAATCGTTGATCCAAGCACTCCTTCAAACGGTTCTCCATAG 3693 0.3956 MRHGGFDFVQYAINIVGPEFSTPQDEAIYEKFEDIVQSKDGDEVSYKELRGLVRLRDFISLMLTYPVKLEEDGVLRSWISAFPEWKAELFSTGGYPVIYKPWSLLTEKALRCMKGFMPVEIMAEIESGERSIFNRDNDVILEGLLPLIVDLAVNQLIQTLFSGDYCARYIRLLTRNSAEKESVVSKIVSALEDKHNLFGIDKDFLMAVWINALTRETDAEVQVQEEINKIMGSISITEGDDMLTTLDTDEKKRRNRLLVIVVDADSNRKKLDLQKVQFPTGIVVLITTESSTQAVMDDGIASTMDLNIWTQDHLLPWKLFNTYVGSCISCSTVGSSTTIQTIAVEIVKKIHGHLLAIVLVAKHLRNVKDDKYWELVLDKLSSRNPFYDYQDCDRIGISRVMVNAFVNIIWEDIDDELKLCLQLSLPVRNIKNGVRDDILVSYWANILRYTQEVGEYKRQLQYYLEELLDCFVLLEFESGDVYLPIEAYDIIKSLHISQPSIIRHSALGLTEIGQWHSLIQLELIDNKICELPQSPDCPKLKVLLLQGNADLLDIPDSFFDHMPLLQHLDLSYTSIRDLPPSLTKLIQLKKLYLKGCDLFMEISPQIFQLKNLEELDLDGTLITHLPKDIQELINLQRLALCFDAYHHVLSRGKKGMQISNTLIIPPGVISNLTRLNYLSLDVDPEDEQWTENVNSVLLEILGLEKLKTVSIYVPETDLLELIPGTKSLNFRLVVGHHIRRLISRVPPELETKFKQCNYSMKFVNGVNVPNGVKMNLERFKALYLDRHMTIKSLSDFNLSNLGRLKVCILAECNEMETIFDGGKSSDEPVSLMLEFLSVFYMKNLRNICQECCPFSSIKYIALHTCPMLTTIFTISTFISIPLLEEISVEDCPKVTTLIIHDSPEERRSAFSLPKLRVISLLYLPNLVNIFNGLRVEHALEEMIFYCCPKLQSLSRSELPWEYLKFIKGESMWWEALDWSVSEWGYAGRPKFLEQFFKPITMEADMKSPPAAHQETQLNEYHGTMYQGVSSSTELMTKLHLETPLLSLSGSKEGEAQKRKAVIEPIIFSPPLLKRKPNESFRRRTPQPSMKVIRTKNLDDGYSWRKYGQKEILGAKYTRGYYRCTYRNTHGCQATKQVQRFDEKPTTFEVNYRGTHTCTQKQDLIAESGDEEVFEDFIAKPDSSSATNKNDIFSWEEITAELEEPSQISFGSSGVGSSEIVDPSTPSNGSP 1230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g01213 1230 Pfam WRKY DNA -binding domain 1098 1157 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun3g01213 1230 SUPERFAMILY L domain-like 499 959 - -
Viun3g01213 1230 Gene3D Ribonuclease Inhibitor 479 705 IPR032675 -
Viun3g01213 1230 MobiDBLite consensus disorder prediction 1204 1230 - -
Viun3g01213 1230 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 229 421 IPR027417 -
Viun3g01213 1230 Gene3D WRKY domain 1088 1159 IPR036576 GO:0003700|GO:0006355|GO:0043565
Viun3g01213 1230 Pfam Leucine rich repeat 538 598 IPR001611 GO:0005515
Viun3g01213 1230 ProSiteProfiles WRKY domain profile. 1097 1155 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun3g01213 1230 PANTHER NB-ARC DOMAIN-CONTAINING PROTEIN-RELATED 159 987 - -
Viun3g01213 1230 Gene3D - 316 393 IPR042197 -
Viun3g01213 1230 SMART LRR_typ_2 609 632 IPR003591 -
Viun3g01213 1230 SMART LRR_typ_2 562 585 IPR003591 -
Viun3g01213 1230 SUPERFAMILY WRKY DNA-binding domain 1092 1159 IPR036576 GO:0003700|GO:0006355|GO:0043565
Viun3g01213 1230 SMART WRKY_cls 1097 1159 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun3g01213 1230 Gene3D Ribonuclease Inhibitor 775 961 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g01213 Viun-Chr3 7573610 7582952 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g01213 1087 1163 WRKY Transcription Factor Family AT5G24110 62.338 8.25e-27 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Viun3g01213 LRR_8 1e-10 CL0022
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g01213 - - vum:124825720 1936