Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g01212 ATGGCTTCCTCAGTGTTTGTGAGCTTCCATCACGAAGACATCAACTTCATCACAGGTTGTGTTCTTGATCCTCTCAGAAATAGAGGCATCCACGTCTTTGTTAAAGGTGAATCCAAAACATTTGACCTGTTTCAAGCCATTGAGCGCTCTCGCCTTTTCATTGTGGTCCTTTCAAAGAACTACGCTTCCTCAATTTGCTGTTTGCGTGAACTAGTGGCTATCATCAATGGCGTTGAATCTTCTCCAAGGTCTGTTCTGCCTATTTTTTATGGTGTCCATCAATCTGAGGTGCTATTTCAGAATGGATGTTATGGGAAAGCCTTTTCTAAACACGAAGAAAGATTCAGGGAACATAAGAAGAGGATGGAAGAAGTGCAGACATGGAGAGAAGCTCTCACACGAGTGGCCGTTTTCCGGGGTTTGCATATGAAAAATGCAACAGGACATGGAGGTTTTGATTTTGTTCAATATGCAATAAATATTGTGGGTCCTGAATTTTCAACTCCTCAAGATGAAGCAATATACGAAAAATTTGAAGATATTGTCCAATCTAAAGATGGAGATGAAGTTTCATACAAGGAGCTGCGAGGTTTGGTTCGATTAAGGGATTTTATCAGCCTCATGTTGACTTATCCAGTGAAGTTAGAAGAGGACGGTGTATTAAGATCCTGGATTAGTGCATTTCCGGAATGGAAAGCTGAGTTATTTTCCACTGGTGGTTATCCTGTGATTTACAAACCATGGAGTCTACTAACTGAGAAGGCACTGAGATGCATGAAAGGATTCATGCCTGTGGAAATAATGGCTGAAATAGAAAGTGGTGAGAGATCCATCTTCAACCGCGATAATGATGTAATACTAGAAGGCCTACTCCCCCTAATTGTTGATCTTGCAGTTAACCAACTAATTCAAACTTTGTTTTCTGGAGATTACTGTGCGCGCTATATCAGATTGTTGACCAGAAACTCTGCTGAAAAAGAATCTGTAGTGAGCAAAATAGTTTCAGCCTTGGAAGATAAACACAACTTGTTTGGAATTGACAAAGATTTTCTTATGGCCGTATGGATCAATGCTTTGACACGTGAGACTGATGCGGAGGTTCAAGTTCAAGAAGAAATCAATAAGATCATGGGAAGTATTTCTATAACAGAAGGTGATGACATGTTAACCACACTAGACACCGACGAAAAGAAGAGGAGAAATAGGCTGTTGGTAATTGTAGTGGATGCAGATAGCAACAGGAAGAAGCTGGACCTCCAAAAAGTGCAATTTCCAACTGGGATAGTGGTGTTGATAACAACTGAGTCTTCAACACAGGCGGTGATGGATGATGGAATTGCATCCACAATGGATTTGAATATTTGGACCCAGGATCATCTGTTGCCTTGGAAACTCTTCAATACCTATGTGGGAAGTTGTATCAGCTGTAGCACAGTGGGTTCATCAACGACCATTCAGACAATAGCGGTGGAAATAGTCAAGAAAATCCATGGTCATCTCCTTGCCATTGTCCTTGTGGCAAAACATCTTAGGAATGTGAAAGATGACAAATACTGGGAGCTTGTACTTGACAAATTAAGCAGTCGAAACCCTTTCTATGATTATCAAGATTGTGACCGAATTGGCATTAGCAGAGTCATGGTCAATGCATTTGTAAATATTATTTGGGAAGACATCGATGATGAACTAAAGCTTTGTCTCCAACTCAGTTTACCTGTTCGCAACATTAAAAATGGGGTGAGAGATGATATCTTGGTTTCTTATTGGGCTAATATATTACGATACACACAAGAGGTTGGTGAATACAAAAGACAGTTACAATATTACCTCGAGGAGCTTCTAGACTGTTTTGTCTTGTTGGAATTTGAAAGTGGAGACGTCTATTTGCCAATAGAAGCCTATGATATAATTAAATCATTACACATCTCACAACCTTCCATCATAAGACATAGTGCATTAGGATTGACGGAGATTGGACAATGGCATAGTCTTATTCAGCTAGAATTGATTGACAATAAAATATGTGAACTACCACAATCACCAGACTGCCCTAAACTCAAAGTGTTGTTGTTGCAGGGCAATGCCGATTTATTGGATATCCCTGATTCATTTTTCGACCACATGCCTCTACTTCAACACTTGGACTTATCCTACACTAGTATAAGGGATCTGCCCCCTTCTCTCACCAAATTGATCCAACTTAAAAAATTATATCTTAAAGGTTGTGATCTCTTCATGGAAATATCCCCTCAAATTTTTCAGCTGAAGAATCTCGAAGAGCTTGATCTTGACGGGACTTTGATAACCCATTTACCAAAAGACATTCAAGAATTGATCAACCTGCAACGCTTAGCCCTATGCTTTGATGCATACCATCATGTACTTAGTCGTGGTAAAAAAGGCATGCAGATTTCTAACACATTGATAATTCCTCCCGGAGTGATATCAAATCTTACTCGGCTGAATTATCTAAGCCTTGACGTCGACCCTGAAGATGAGCAATGGACCGAGAACGTCAATAGCGTATTGCTGGAAATTTTGGGACTAGAGAAGTTGAAGACGGTGAGTATATATGTCCCGGAGACTGATCTCTTGGAACTCATACCCGGCACAAAATCTCTCAATTTCCGATTGGTTGTTGGTCATCACATACGGCGTCTAATATCTCGTGTACCACCTGAACTAGAGACAAAATTCAAACAGTGTAACTATAGCATGAAGTTTGTTAATGGTGTAAATGTTCCCAATGGAGTGAAAATGAATCTTGAACGCTTCAAGGCCTTGTACCTTGATCGACATATGACCATCAAGAGTCTCTCGGATTTCAATTTGAGCAACTTAGGCAGGTTAAAAGTTTGCATATTGGCGGAATGTAATGAAATGGAAACAATTTTCGATGGAGGTAAGTCATCTGATGAACCTGTTTCTCTGATGTTGGAGTTCTTGAGTGTATTTTATATGAAGAATTTAAGAAACATTTGCCAAGAATGTTGTCCCTTCTCCTCCATAAAGTATATAGCATTACACACTTGTCCCATGTTAACTACTATCTTCACCATCAGTACTTTTATCAGCATTCCCCTTTTGGAAGAGATTAGTGTTGAAGACTGTCCAAAAGTAACCACCCTAATAATTCATGACTCACCAGAAGAACGTAGATCAGCGTTTTCCCTCCCCAAGTTGAGAGTGATATCGCTTCTTTATCTTCCCAACTTGGTCAATATTTTTAATGGCCTGCGTGTTGAACATGCTTTAGAAGAAATGATATTTTATTGTTGCCCAAAACTCCAAAGTCTTTCCAGATCGGAGTTGCCATGGGAATATTTGAAGTTCATTAAAGGAGAAAGCATGTGGTGGGAAGCATTGGACTGGAGTGTATCAGAGTGGGGTTATGCTGGTCGACCCAAATTTCTTGAGCAATTTTTTAAACCAATTACAATGGAGGCTGACATGAAGAGCCCACCAGCTGCACATCAAGAGACTCAACTAAATGAATATCACGGTACCATGTATCAGGGAGTTTCAAGTTCTACCGAGTTGATGACGAAGCTACATTTAGAAACACCTCTTTTGTCGTTATCGGGTAGTAAAGAAGGTGAAGCCCAAAAGCGGAAAGCCGTTATTGAGCCAATAATTTTTTCACCACCGTTGTTAAAAAGGAAACCAAACGAGAGTTTTCGGAGAAGAACACCTCAACCATCTATGAAAGTGATACGTACTAAGAATTTAGATGATGGATATTCCTGGAGAAAATATGGGCAGAAGGAGATTCTTGGAGCTAAGTATACGAGAGGATATTACCGCTGCACATATAGAAATACACATGGGTGCCAAGCAACCAAACAAGTTCAAAGGTTTGATGAGAAACCAACAACATTTGAGGTAAATTACAGAGGAACTCATACGTGCACCCAAAAACAGGATTTGATCGCTGAAAGTGGGGATGAGGAAGTATTCGAAGATTTTATTGCAAAACCAGATTCTTCATCAGCTACCAACAAAAATGATATTTTCTCTTGGGAGGAAATAACAGCTGAACTAGAAGAACCAAGTCAGATATCATTCGGATCAAGTGGGGTTGGATCAAGTGAAATCGTTGATCCAAGCACTCCTTCAAACGGTTCTCCATAG 4131 0.3994 MASSVFVSFHHEDINFITGCVLDPLRNRGIHVFVKGESKTFDLFQAIERSRLFIVVLSKNYASSICCLRELVAIINGVESSPRSVLPIFYGVHQSEVLFQNGCYGKAFSKHEERFREHKKRMEEVQTWREALTRVAVFRGLHMKNATGHGGFDFVQYAINIVGPEFSTPQDEAIYEKFEDIVQSKDGDEVSYKELRGLVRLRDFISLMLTYPVKLEEDGVLRSWISAFPEWKAELFSTGGYPVIYKPWSLLTEKALRCMKGFMPVEIMAEIESGERSIFNRDNDVILEGLLPLIVDLAVNQLIQTLFSGDYCARYIRLLTRNSAEKESVVSKIVSALEDKHNLFGIDKDFLMAVWINALTRETDAEVQVQEEINKIMGSISITEGDDMLTTLDTDEKKRRNRLLVIVVDADSNRKKLDLQKVQFPTGIVVLITTESSTQAVMDDGIASTMDLNIWTQDHLLPWKLFNTYVGSCISCSTVGSSTTIQTIAVEIVKKIHGHLLAIVLVAKHLRNVKDDKYWELVLDKLSSRNPFYDYQDCDRIGISRVMVNAFVNIIWEDIDDELKLCLQLSLPVRNIKNGVRDDILVSYWANILRYTQEVGEYKRQLQYYLEELLDCFVLLEFESGDVYLPIEAYDIIKSLHISQPSIIRHSALGLTEIGQWHSLIQLELIDNKICELPQSPDCPKLKVLLLQGNADLLDIPDSFFDHMPLLQHLDLSYTSIRDLPPSLTKLIQLKKLYLKGCDLFMEISPQIFQLKNLEELDLDGTLITHLPKDIQELINLQRLALCFDAYHHVLSRGKKGMQISNTLIIPPGVISNLTRLNYLSLDVDPEDEQWTENVNSVLLEILGLEKLKTVSIYVPETDLLELIPGTKSLNFRLVVGHHIRRLISRVPPELETKFKQCNYSMKFVNGVNVPNGVKMNLERFKALYLDRHMTIKSLSDFNLSNLGRLKVCILAECNEMETIFDGGKSSDEPVSLMLEFLSVFYMKNLRNICQECCPFSSIKYIALHTCPMLTTIFTISTFISIPLLEEISVEDCPKVTTLIIHDSPEERRSAFSLPKLRVISLLYLPNLVNIFNGLRVEHALEEMIFYCCPKLQSLSRSELPWEYLKFIKGESMWWEALDWSVSEWGYAGRPKFLEQFFKPITMEADMKSPPAAHQETQLNEYHGTMYQGVSSSTELMTKLHLETPLLSLSGSKEGEAQKRKAVIEPIIFSPPLLKRKPNESFRRRTPQPSMKVIRTKNLDDGYSWRKYGQKEILGAKYTRGYYRCTYRNTHGCQATKQVQRFDEKPTTFEVNYRGTHTCTQKQDLIAESGDEEVFEDFIAKPDSSSATNKNDIFSWEEITAELEEPSQISFGSSGVGSSEIVDPSTPSNGSP 1376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g01212 1376 PANTHER NB-ARC DOMAIN-CONTAINING PROTEIN-RELATED 305 1133 - -
Viun3g01212 1376 Gene3D WRKY domain 1234 1305 IPR036576 GO:0003700|GO:0006355|GO:0043565
Viun3g01212 1376 ProSiteProfiles TIR domain profile. 1 159 IPR000157 GO:0007165
Viun3g01212 1376 SMART LRR_typ_2 755 778 IPR003591 -
Viun3g01212 1376 SMART LRR_typ_2 708 731 IPR003591 -
Viun3g01212 1376 Gene3D - 462 539 IPR042197 -
Viun3g01212 1376 SUPERFAMILY Toll/Interleukin receptor TIR domain 4 136 IPR035897 -
Viun3g01212 1376 Pfam TIR domain 28 134 IPR000157 GO:0007165
Viun3g01212 1376 SUPERFAMILY WRKY DNA-binding domain 1238 1305 IPR036576 GO:0003700|GO:0006355|GO:0043565
Viun3g01212 1376 ProSiteProfiles WRKY domain profile. 1243 1301 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun3g01212 1376 Gene3D - 2 174 IPR035897 -
Viun3g01212 1376 SMART WRKY_cls 1243 1305 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun3g01212 1376 MobiDBLite consensus disorder prediction 1350 1376 - -
Viun3g01212 1376 SMART till_3 2 138 IPR000157 GO:0007165
Viun3g01212 1376 Gene3D Ribonuclease Inhibitor 625 851 IPR032675 -
Viun3g01212 1376 Gene3D Ribonuclease Inhibitor 914 1109 IPR032675 -
Viun3g01212 1376 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 376 567 IPR027417 -
Viun3g01212 1376 SUPERFAMILY L domain-like 645 1105 - -
Viun3g01212 1376 Pfam WRKY DNA -binding domain 1244 1303 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun3g01212 1376 Pfam Leucine rich repeat 684 744 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g01212 Viun-Chr3 7573361 7582952 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g01212 1233 1309 WRKY Transcription Factor Family AT5G24110 62.338 1.02e-26 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Viun3g01212 TIR 3.9e-20 CL0173
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g01212 - - vum:124825720 2175.21