LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun3g01210	ATGAGTGAACTTGGAAGGCCTGTCTCAAGTAAAAGAAGGTTGAAGGATTTATTGCTTCAAAAAGATAATCGTTTTTGTGCTGATTGTAATGCTCCAGATCCTCAATGGGCATCAGCGAATATTGGAGTTTTTATATGCCTAAAATGCTGTGGTGTGCACAGAAGTCTTGGCGCTCATATATCAAAGGTTTTGTCTGTGACATTGGATGAATGGTCAGATGAGGAAATAGATGCAATGATTGAAGTTGGAGGAAATTCTTCTGCTAATTCAATTTATGAGGCTTATATTTCACAAGGAAGTGTAAAACCAGGACCAGATGCCAATCATGAGCTGCGCAAAAATTTCATCCGGTCGAAGTATGAACGTCAAGAATTTGTTAAACCTAGTTTGCGCATTAAGTCGGGAAGAATGAATAGTAAAGGGATTATGGATAATTTGCGAAGTACTAGCGGTTCGCATGAGGACGGAAAGGGAGGATTTATTGGAAATTTGAAGGTAAAAGTGATCAAAGGCACAGATTTAGCTATCAGAGATATGATGACCAGTGATCCATATGTTATCTTCACACTTGGCCAACAGACTGTTCAGACAACTGTAGTAAAGAGTAATTTGAATCCAGTCTGGAATGAAGAACTTATGCTGTCTGTCACTAGGCCATTTCCATTATTGAATTTGAAGGTATTTGATTATGACTTTTTTTCATCTGATGATATAATGGGGGAAGCAGACATTGATCTTCAACCCCTGATTTCATCTGCAATGAACTATGGAGATCCTAGTATGTTTGAGGATATGCAGATAGGAATATGGATGAAATCTCAAGACAATGCGCTTATAGATGATAGCGAAGTCAAAATTGTTGGTGGTAAAGTTAAACAGGAGATATTAATCAAGCTCCAGAACGTTGAATCTGGAGAATTAGAGTTAGCACTTGAGTGGATGCCTTTTGATCATTAG	957	0.3804	MSELGRPVSSKRRLKDLLLQKDNRFCADCNAPDPQWASANIGVFICLKCCGVHRSLGAHISKVLSVTLDEWSDEEIDAMIEVGGNSSANSIYEAYISQGSVKPGPDANHELRKNFIRSKYERQEFVKPSLRIKSGRMNSKGIMDNLRSTSGSHEDGKGGFIGNLKVKVIKGTDLAIRDMMTSDPYVIFTLGQQTVQTTVVKSNLNPVWNEELMLSVTRPFPLLNLKVFDYDFFSSDDIMGEADIDLQPLISSAMNYGDPSMFEDMQIGIWMKSQDNALIDDSEVKIVGGKVKQEILIKLQNVESGELELALEWMPFDH	318

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun3g01210	318	Pfam	Putative GTPase activating protein for Arf	12	128	IPR001164	GO:0005096
	Viun3g01210	318	Gene3D	Arf GTPase activating protein	5	132	IPR038508	-
	Viun3g01210	318	SMART	C2_3c	163	258	IPR000008	-
	Viun3g01210	318	PANTHER	ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12	4	317	IPR044518	GO:0005096\|GO:0005543
	Viun3g01210	318	PRINTS	HIV Rev interacting protein signature	23	42	IPR001164	GO:0005096
	Viun3g01210	318	PRINTS	HIV Rev interacting protein signature	63	84	IPR001164	GO:0005096
	Viun3g01210	318	PRINTS	HIV Rev interacting protein signature	42	59	IPR001164	GO:0005096
	Viun3g01210	318	FunFam	Arf-GAP with dual PH domain-containing protein 1	6	134	-	-
	Viun3g01210	318	Pfam	C2 domain	162	253	IPR000008	-
	Viun3g01210	318	CDD	C2_ArfGAP	161	305	-	-
	Viun3g01210	318	CDD	ArfGap	14	120	-	-
	Viun3g01210	318	ProSiteProfiles	ARF GTPase-activating proteins domain profile.	11	126	IPR001164	GO:0005096
	Viun3g01210	318	SMART	arf_gap_3	11	133	IPR001164	GO:0005096
	Viun3g01210	318	SUPERFAMILY	ArfGap/RecO-like zinc finger	11	128	IPR037278	-
	Viun3g01210	318	ProSiteProfiles	C2 domain profile.	145	260	IPR000008	-
	Viun3g01210	318	SUPERFAMILY	C2 domain (Calcium/lipid-binding domain, CaLB)	162	306	IPR035892	-
	Viun3g01210	318	Gene3D	C2 domain	161	318	IPR035892	-
	Viun3g01210	318	FunFam	ADP-ribosylation factor GTPase-activating protein AGD12	160	318	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun3g01210	Viun-Chr3	7555701	7561527	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun3g01210	4	318	C2H2 Transcription Factor Family	AT4G21160	68.182	2.72e-167	466

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun3g01210	K12486		-	gmx:100777084	478.018