Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g01208 ATGGAGAAGTTTCTACTCCACATTAAGTTGAAAATGGGAAAGATGAATAGCTACTGGTATAATGAAGATGAAGGGCAGCACCAGTCCGAGTCCCAAGTGCAGTCCCCGTCCGCGAATGGAATTTCTGATTCCGGTATTAGTACCCAGAATGTCAATGTACAGTATGCAACACCTGGCCAGCTTGGAGCTGGGCATGCAATGGTACCACCTGTGTATCCATATCCAGATCCTTATTATAGAAGCATCTTTGCTCCCTATGATACTCAACCTTATCCCCCACAAGCCTATGGTGCACAGCCAATGGTCCATCTTCAGTTAATGGGAATTCAGCAAGCTGGTGTTCCTCTTCCAACTGATGCAGTTGAGGAACCTGTGTTTGTCAATGCAAAACAATATCACGGTATATTGAGACGTAGACAATCCCGTGCTAAAGCTGAATCAGAAAATAAAGCTATAAGAAATAGGAAGCCATACTTGCATGAATCTCGACACATGCATGCACTGAGAAGACCGAGAGGATGTGGTGGTCGGTTTCTGAATTCAAAGAAAGAGGAGGAGAACCAGCATAATGATGTGGCATCAGCAGACAAATCACAATCCAATATCAATCTGAATTCTGATAAAAATGATCAAACATCATCAGATAGGACATCCTGA 657 0.4323 MEKFLLHIKLKMGKMNSYWYNEDEGQHQSESQVQSPSANGISDSGISTQNVNVQYATPGQLGAGHAMVPPVYPYPDPYYRSIFAPYDTQPYPPQAYGAQPMVHLQLMGIQQAGVPLPTDAVEEPVFVNAKQYHGILRRRQSRAKAESENKAIRNRKPYLHESRHMHALRRPRGCGGRFLNSKKEEENQHNDVASADKSQSNINLNSDKNDQTSSDRTS 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g01208 218 Gene3D - 121 182 - -
Viun3g01208 218 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 26 216 IPR001289 GO:0003700|GO:0006355
Viun3g01208 218 ProSitePatterns NF-YA/HAP2 subunit signature. 126 146 IPR018362 GO:0003677|GO:0016602
Viun3g01208 218 SMART cbf3 120 181 IPR001289 GO:0003700|GO:0006355
Viun3g01208 218 MobiDBLite consensus disorder prediction 23 46 - -
Viun3g01208 218 PRINTS CCAAT-binding transcription factor subunit B signature 124 146 IPR001289 GO:0003700|GO:0006355
Viun3g01208 218 PRINTS CCAAT-binding transcription factor subunit B signature 155 178 IPR001289 GO:0003700|GO:0006355
Viun3g01208 218 MobiDBLite consensus disorder prediction 139 158 - -
Viun3g01208 218 MobiDBLite consensus disorder prediction 193 212 - -
Viun3g01208 218 MobiDBLite consensus disorder prediction 139 218 - -
Viun3g01208 218 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 123 178 IPR001289 GO:0003700|GO:0006355
Viun3g01208 218 MobiDBLite consensus disorder prediction 177 192 - -
Viun3g01208 218 ProSiteProfiles NF-YA/HAP2 family profile. 121 181 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g01208 Viun-Chr3 7536771 7541837 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g01208 24 218 CCAAT-HAP2 Transcription Factor Family AT1G30500 58.462 1.81e-68 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Viun3g01208 CBFB_NFYA 3.4e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g01208 K08064 - gmx:100499754 362.844