Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Viun3g01208 | ATGGAGAAGTTTCTACTCCACATTAAGTTGAAAATGGGAAAGATGAATAGCTACTGGTATAATGAAGATGAAGGGCAGCACCAGTCCGAGTCCCAAGTGCAGTCCCCGTCCGCGAATGGAATTTCTGATTCCGGTATTAGTACCCAGAATGTCAATGTACAGTATGCAACACCTGGCCAGCTTGGAGCTGGGCATGCAATGGTACCACCTGTGTATCCATATCCAGATCCTTATTATAGAAGCATCTTTGCTCCCTATGATACTCAACCTTATCCCCCACAAGCCTATGGTGCACAGCCAATGGTCCATCTTCAGTTAATGGGAATTCAGCAAGCTGGTGTTCCTCTTCCAACTGATGCAGTTGAGGAACCTGTGTTTGTCAATGCAAAACAATATCACGGTATATTGAGACGTAGACAATCCCGTGCTAAAGCTGAATCAGAAAATAAAGCTATAAGAAATAGGAAGCCATACTTGCATGAATCTCGACACATGCATGCACTGAGAAGACCGAGAGGATGTGGTGGTCGGTTTCTGAATTCAAAGAAAGAGGAGGAGAACCAGCATAATGATGTGGCATCAGCAGACAAATCACAATCCAATATCAATCTGAATTCTGATAAAAATGATCAAACATCATCAGATAGGACATCCTGA | 657 | 0.4323 | MEKFLLHIKLKMGKMNSYWYNEDEGQHQSESQVQSPSANGISDSGISTQNVNVQYATPGQLGAGHAMVPPVYPYPDPYYRSIFAPYDTQPYPPQAYGAQPMVHLQLMGIQQAGVPLPTDAVEEPVFVNAKQYHGILRRRQSRAKAESENKAIRNRKPYLHESRHMHALRRPRGCGGRFLNSKKEEENQHNDVASADKSQSNINLNSDKNDQTSSDRTS | 218 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Viun3g01208 | 218 | Gene3D | - | 121 | 182 | - | - | |
Viun3g01208 | 218 | PANTHER | TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED | 26 | 216 | IPR001289 | GO:0003700|GO:0006355 | |
Viun3g01208 | 218 | ProSitePatterns | NF-YA/HAP2 subunit signature. | 126 | 146 | IPR018362 | GO:0003677|GO:0016602 | |
Viun3g01208 | 218 | SMART | cbf3 | 120 | 181 | IPR001289 | GO:0003700|GO:0006355 | |
Viun3g01208 | 218 | MobiDBLite | consensus disorder prediction | 23 | 46 | - | - | |
Viun3g01208 | 218 | PRINTS | CCAAT-binding transcription factor subunit B signature | 124 | 146 | IPR001289 | GO:0003700|GO:0006355 | |
Viun3g01208 | 218 | PRINTS | CCAAT-binding transcription factor subunit B signature | 155 | 178 | IPR001289 | GO:0003700|GO:0006355 | |
Viun3g01208 | 218 | MobiDBLite | consensus disorder prediction | 139 | 158 | - | - | |
Viun3g01208 | 218 | MobiDBLite | consensus disorder prediction | 193 | 212 | - | - | |
Viun3g01208 | 218 | MobiDBLite | consensus disorder prediction | 139 | 218 | - | - | |
Viun3g01208 | 218 | Pfam | CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B | 123 | 178 | IPR001289 | GO:0003700|GO:0006355 | |
Viun3g01208 | 218 | MobiDBLite | consensus disorder prediction | 177 | 192 | - | - | |
Viun3g01208 | 218 | ProSiteProfiles | NF-YA/HAP2 family profile. | 121 | 181 | IPR001289 | GO:0003700|GO:0006355 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Viun3g01208 | Viun-Chr3 | 7536771 | 7541837 | Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Viun3g01208 | 24 | 218 | CCAAT-HAP2 Transcription Factor Family | AT1G30500 | 58.462 | 1.81e-68 | 206 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | NF-YA | Viun3g01208 | CBFB_NFYA | 3.4e-26 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Viun3g01208 | K08064 | - | gmx:100499754 | 362.844 |