Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g01203 ATGGAAGGTCACCGGAAGCCGTTGAAGCCGCGCCTTGAGCGGCGGAACGCCATGAAGAACATCGATTACCGGTTGAAGGAGGATGAAGACACAGACACCGACACGGACATAGACATAGGTAGTTTGGATGAAAGGAGTTTCCGAGTGGAAGGAATTGACGGCGAATTCGACCGGATATTTCGGAGCTTGGGTCTGTCCGGGCCCGAGGACTTTGCCATCCCAGCGGCGGCTTGGAAAGAAGCCCAGGCCCAGAAGGCCCGCAGCACCGTGAACCTTCAACACGAACCGCCGCCACAAAATAAAAAGCAGAGAGAGGGGGGAATAAATGGCGTTAGGCCTCCCATTTTGGAACCCACGCAGGTTACCTCATCTTGGACCACCCAACAACCAACGGATTCTGATTCCGTGTCACGTGATGAAGACAGTGATGTTGGTGTTGAAGCTGAAATTGAAAAGGTTTCTGCTTTGGTCGGGAATGAGACCTTTGATGTTCAAAACTTGTCGCTGAATGCAACCGGATATTTCGGGTCGTGGCAGAAAGGCGAGATCTTGGGAAAGGGCTCTTTTGGAACTGTTTATGAAGGCTTCACGGACGATGGGAACTTTTTTGCTGTAAAGGAAGTGTCTTTATTGGATGACGGCAGCCAGGGAAAACAGAGCATTTTCCAGCTTCAGCAGGAAATCTCTCTTTTGAGTCAGTTCCGACACGACAACATAGTTCGATATCTTGGTACTGACAAGGACAATGACAAGCTGTATATCTTCCTCGAACTTGTAACAAAAGGATCATTGGCAAGTCTCTATCAAAAGTATCGACTAGGGGACTCTCAAGTATCTTCATACACAAGACAGATTTTGAGTGGCTTGAAGTATCTTCATGATCGTAATGTGGTTCACAGGGACATCAAGTGTGCCAATATATTGGTTGATGCAAATGGCTCCGTCAAGCTTGCAGATTTTGGATTGGCGAAGGCAACCAAGCTGAATGATGTTAAATCAAGTAAAGGCTCTCCCTACTGGATGGCCCCCGAGGTTGTTAACTTGAGGAACCGTGGATATGGGTTAGCAGCTGATATATGGAGCTTAGGATGTACAGTGTTAGAGATGTTGACGCGGCAACCTCCTTATTCTCATTTGGAAGGAATGCAAGCGATATTCCGAATTGGCAGTGGTCAACCCCCACCTGTTCCGGAATCTTTGTCAACAGATGCCCGAGATTTTATTCTTAAATGCTTACAAGTTAACCCTAACAAACGGCCAACTGCTGCCCGGCTATTAGACCATCCATTTGTAAAGAGACCACTTCTGTCTCCCATAAGTCCTGTTTCTCCAAGTATCAATCTTTTACTGTCCTAA 1356 0.4727 MEGHRKPLKPRLERRNAMKNIDYRLKEDEDTDTDTDIDIGSLDERSFRVEGIDGEFDRIFRSLGLSGPEDFAIPAAAWKEAQAQKARSTVNLQHEPPPQNKKQREGGINGVRPPILEPTQVTSSWTTQQPTDSDSVSRDEDSDVGVEAEIEKVSALVGNETFDVQNLSLNATGYFGSWQKGEILGKGSFGTVYEGFTDDGNFFAVKEVSLLDDGSQGKQSIFQLQQEISLLSQFRHDNIVRYLGTDKDNDKLYIFLELVTKGSLASLYQKYRLGDSQVSSYTRQILSGLKYLHDRNVVHRDIKCANILVDANGSVKLADFGLAKATKLNDVKSSKGSPYWMAPEVVNLRNRGYGLAADIWSLGCTVLEMLTRQPPYSHLEGMQAIFRIGSGQPPPVPESLSTDARDFILKCLQVNPNKRPTAARLLDHPFVKRPLLSPISPVSPSINLLLS 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g01203 451 Pfam Protein kinase domain 179 431 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g01203 451 MobiDBLite consensus disorder prediction 116 133 - -
Viun3g01203 451 MobiDBLite consensus disorder prediction 84 144 - -
Viun3g01203 451 ProSiteProfiles Protein kinase domain profile. 178 431 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g01203 451 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 85 435 - -
Viun3g01203 451 SUPERFAMILY Protein kinase-like (PK-like) 175 441 IPR011009 -
Viun3g01203 451 SMART serkin_6 178 431 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g01203 451 ProSitePatterns Serine/Threonine protein kinases active-site signature. 297 309 IPR008271 GO:0004672|GO:0006468
Viun3g01203 451 Gene3D Transferase(Phosphotransferase) domain 1 177 442 - -
Viun3g01203 451 FunFam Mitogen-activated protein kinase 1, putative, expressed 176 444 - -
Viun3g01203 451 ProSitePatterns Protein kinases ATP-binding region signature. 184 206 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g01203 Viun-Chr3 7482192 7485749 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g01203 11 91 MAP Kinase Kinase Kinase AT4G08500 40.000 1.64e-10 61.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Viun3g01203 Pkinase 1.5e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g01203 - K13414 var:108347588 804.668