Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g01196 ATGGGTAATTGCTGGTGTAGATGGGAGTCATCAGATTATAGAGTTTCATCCAATGTAAAGTCAGAACAAAACCAGGTAACGAAGGAAAGAAATGATTATGATAGCAAGTTGCCATCAAACCCTGAGGAAGTAGAAGACCTAAGGCGTGACTCTGCTGCAAATCCATTGATTGTATTCAGTTATGATGAGTTGAAGATAATCACTGCAAATTTTAGGCCAGATCGTGTGTTGGGGGGAGGAGGATTTGGAAGTGTGTACAAAGGCTTCATTTCTGAGGAGTTAAGGCTGGGTCTTCCTACTCTTGCTGTAGCTGTTAAGGTTCATGATGGTGACAATAGTCATCAAGGCCACAGAGAATGGCTGGCAGAAGTGATATTTTTGGGACAGCTTTCACATCCAAATCTAGTCAAATTAGTTGGATACTGCTGCGAGGATGAACATAGGGTACTGATATATGAGTACATGTCCCGGGGAAGTGTGGAACACAACTTGTTCTCAAAAATCTTGCTTCCCATGCCATGGTCCATAAGAATGAAGATTGCATTTGGTGCTGCTAAGGGACTTGCATTTCTTCACGAAGCAGAGAAACCTGTCATCTATCGTGATTTCAAGACATCAAATATTTTATTAGACCAGGACTACAATGCAAAACTTTCTGATTTTGGCCTTGCCAAGGATGGACCAGTTGGAGACAAATCACATGTTTCTACAAGAGTAATGGGAACTTATGGTTATGCAGCACCTGAATACATAATGACAGGTCATTTGACTCCTAGAAGTGATGTTTACAGTTTTGGGGTGGTTCTGCTTGAGCTTCTGACAGGAAGAAAATCTTTAGACAAGTTAAGACCTGCCAGAGAGCAGAATCTGACAGAATGGGCTATTCCTCTGCTGAAGGAAAAGAAGAAATTTGTAAACATAATAGATCCAAGGTTGGATGGTGATTATCCAATTAAAGCAGTTCACAAGGCTGCAATGCTTGCATATCATTGCTTGAACCGCAATCCAAAAGCAAGGCCTCTGATGAGAGATATTGTGGACTCGTTGGAGCCTTTGCAGGCATACACAGAGGTTCCTATGGGAAAAACAGTGACCATAATCAGTGAGGTTCCTGAATCTGGTTTGAAAATCAAAGATGCAAAATCACTTTAA 1152 0.4132 MGNCWCRWESSDYRVSSNVKSEQNQVTKERNDYDSKLPSNPEEVEDLRRDSAANPLIVFSYDELKIITANFRPDRVLGGGGFGSVYKGFISEELRLGLPTLAVAVKVHDGDNSHQGHREWLAEVIFLGQLSHPNLVKLVGYCCEDEHRVLIYEYMSRGSVEHNLFSKILLPMPWSIRMKIAFGAAKGLAFLHEAEKPVIYRDFKTSNILLDQDYNAKLSDFGLAKDGPVGDKSHVSTRVMGTYGYAAPEYIMTGHLTPRSDVYSFGVVLLELLTGRKSLDKLRPAREQNLTEWAIPLLKEKKKFVNIIDPRLDGDYPIKAVHKAAMLAYHCLNRNPKARPLMRDIVDSLEPLQAYTEVPMGKTVTIISEVPESGLKIKDAKSL 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g01196 383 Gene3D Transferase(Phosphotransferase) domain 1 155 365 - -
Viun3g01196 383 FunFam Probable serine/threonine-protein kinase PBL8 155 368 - -
Viun3g01196 383 CDD STKc_IRAK 77 352 - -
Viun3g01196 383 Pfam Protein tyrosine and serine/threonine kinase 74 349 IPR001245 GO:0004672|GO:0006468
Viun3g01196 383 MobiDBLite consensus disorder prediction 25 46 - -
Viun3g01196 383 SUPERFAMILY Protein kinase-like (PK-like) 43 349 IPR011009 -
Viun3g01196 383 Gene3D Phosphorylase Kinase; domain 1 33 154 - -
Viun3g01196 383 FunFam Serine/threonine-protein kinase BIK1 38 154 - -
Viun3g01196 383 ProSitePatterns Protein kinases ATP-binding region signature. 77 106 IPR017441 GO:0005524
Viun3g01196 383 PANTHER OS01G0588500 PROTEIN-RELATED 29 353 - -
Viun3g01196 383 ProSitePatterns Serine/Threonine protein kinases active-site signature. 198 210 IPR008271 GO:0004672|GO:0006468
Viun3g01196 383 MobiDBLite consensus disorder prediction 18 46 - -
Viun3g01196 383 ProSiteProfiles Protein kinase domain profile. 71 353 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g01196 Viun-Chr3 7444168 7450328 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g01196 14 349 Glycoside Hydrolase AT3G07070 48.555 2.54e-105 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Viun3g01196 PK_Tyr_Ser-Thr 2.4e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g01196 - - gmx:100775722 727.243