Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g01146 ATGTTGGACGCCATGGATGAACCTCAAACAGAAAAGTATGCATCCCATGATCCCAACTACATTGTTAGGGACAAAGTTTACAACTTTATGAAATTCATCAATATGGGGTCCATTTTTGTGCTTTTGATCTTCTTGGTAGCATCAAATCCTAGCTCAGCAACACCTTCTCCCACCAGTTCACCCAGCAACAATTCTACATGCCCAGTGTCCATGAATTATGTTCAAACAGTCCCTTGGAACATCTCTTACTGCCATAACTTCCAACCCTTGCAATCCCAATACCAAACAAGCACAAGTCTTTGTTGCCAAACCCTCTTATCCCTCTTTGGGGTAGCACTTGCACAAAACCTTAAGAAAAACTCCCTTTTTCAACTACCTAATCTCCCTACATCTATCTCTTGCCTCCAACACTTCCAATCCAATCTCACATCCCTCTCACTTCCCAACAACCTTGTCTCCTCCTGCTTTGATCCACAACAATTTGTCATCACTCCCGACATCTGTGCTCGGATTCAAAACATGGAAGATTGGTTCGCCAGGCTTGGTTCTACACCACAGCTCGACACTGCGTGTAAACCAGACCTTAGTGATAGAAACCAATGCACCAAGTGCGAGGCTGAGGGGGACAAGGTTCAGCAGAAGCTTAGTGCCATTGATGGTAATGAATCACATTCCCAAGATTGCTTTTACTTCACAGCACTTTACATGGCTGGTGTTGCCAATCAGTATGGCCCTGAGAGCAGAGGTGCTTTGTCTTGCATTTTGATTTTGTTGCTTAATTCGCAAGTTGATTCAAGGGATAGCCATCGTGCTCTTAGGCTTGGTTTGTTTATAGCTTCACTTGCAGTCCTGGTAATCGTGTTGTTAGGATTAGGGGTGTATTTTTGGTATATCAAAAGAAGAAGTGTTGAGAATTTGCTTGCCTATGCTGATCTACAGGAAGAAAGGTTCAGGCTAAGGTTGAGACCAAATACAGTGTTGACTTGGTTTGAAATTGAGAGTCTTGTGAGGGCCACCAACAATTTTTCACCTCAGAACTTCATTGGCAGAGGTGGGTTTGGGACGGTTTACAAGGGCATTCTACCTGATGGCACAATGGTTGCGGTGAAAAGGCTTGAAGAATCGAATTATCAAGCAGATGATCTGTTTTACAGTGAGGTTGAGATTGTTAGCAACTTGAAGCACCGTAATCTGGTGCCACTAAGAGGGTGTTGTGTGGTTGATGAGAATCATAATCTTGAGTACAGAGGAAGGTATCTAGTTCATCAATATATGCCAAATGGAAGCCTTCAAGACCATCTTTTTCCAACCGAATTAGACAATCAATATACAAAGAAATCCCTGACTTGGACTCAAAGAAAAAGCATAGTCTTGGATGTGGCAAATGCATTGGTTTATTTGCACTTTGGAGTTAAACCTGCAGTGTATCACAGAGATATCAAATCCACCAATATACTACTTGATGCAGATATGAGAGCGAGGGTTGGAGATTTTGGGCTAGTCAAACGGAGCAGTGAAAGCACGTCTCATCTAAATACAATAGTAGCTGGAACTCGTGGATATGTAGCACCTGAATATGCACTCTATGGTCAGCTAACTGAGAAGAGTGACGTCTACAGCTTTGGTGTGGTTGTTCTTGAGATAATGTGTGGAAGAAAAGCCCTTGAGTTATCTTCCTCAGGGGCTCCGGTTTTCTTGATCACAGATTGGGTTTGGTCATTAATGAGATCTGGAAACATAGGAGAGGCTTTGGATGCTTCTTTGTTAGTAGACAAAAATTGTGCTAGAAACATAATGGAGAGGTTTTTGCTGGTTGGAATTCTTTCTTCTCATGTAATGTTTGCTTCAAGACCAACAATTTTGAATGCCTTGAAAATGTTAGAAGGGGATATTGAGATCCCACCAATTCCAGATAGGCCACTGATGCATGGACACTATGTGATGTATGATGGTGATGGCTCTGGGATGAGCTCGGAATGTGGGTTTGTGAGCTCATGA 1998 0.4259 MLDAMDEPQTEKYASHDPNYIVRDKVYNFMKFINMGSIFVLLIFLVASNPSSATPSPTSSPSNNSTCPVSMNYVQTVPWNISYCHNFQPLQSQYQTSTSLCCQTLLSLFGVALAQNLKKNSLFQLPNLPTSISCLQHFQSNLTSLSLPNNLVSSCFDPQQFVITPDICARIQNMEDWFARLGSTPQLDTACKPDLSDRNQCTKCEAEGDKVQQKLSAIDGNESHSQDCFYFTALYMAGVANQYGPESRGALSCILILLLNSQVDSRDSHRALRLGLFIASLAVLVIVLLGLGVYFWYIKRRSVENLLAYADLQEERFRLRLRPNTVLTWFEIESLVRATNNFSPQNFIGRGGFGTVYKGILPDGTMVAVKRLEESNYQADDLFYSEVEIVSNLKHRNLVPLRGCCVVDENHNLEYRGRYLVHQYMPNGSLQDHLFPTELDNQYTKKSLTWTQRKSIVLDVANALVYLHFGVKPAVYHRDIKSTNILLDADMRARVGDFGLVKRSSESTSHLNTIVAGTRGYVAPEYALYGQLTEKSDVYSFGVVVLEIMCGRKALELSSSGAPVFLITDWVWSLMRSGNIGEALDASLLVDKNCARNIMERFLLVGILSSHVMFASRPTILNALKMLEGDIEIPPIPDRPLMHGHYVMYDGDGSGMSSECGFVSS 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g01146 665 SMART serkin_6 342 614 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g01146 665 ProSitePatterns Protein kinases ATP-binding region signature. 348 370 IPR017441 GO:0005524
Viun3g01146 665 SUPERFAMILY Protein kinase-like (PK-like) 323 627 IPR011009 -
Viun3g01146 665 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 71 648 - -
Viun3g01146 665 FunFam Receptor-like serine/threonine-protein kinase At4g25390 307 424 - -
Viun3g01146 665 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 425 635 - -
Viun3g01146 665 Gene3D Phosphorylase Kinase; domain 1 307 424 - -
Viun3g01146 665 ProSitePatterns Serine/Threonine protein kinases active-site signature. 475 487 IPR008271 GO:0004672|GO:0006468
Viun3g01146 665 Gene3D Transferase(Phosphotransferase) domain 1 425 642 - -
Viun3g01146 665 Pfam SPARK 62 229 IPR043891 -
Viun3g01146 665 ProSiteProfiles Protein kinase domain profile. 342 614 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g01146 665 Pfam Protein kinase domain 345 557 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g01146 Viun-Chr3 7136737 7140137 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g01146 60 657 Receptor kinase-like Gene Family AT1G11050 55.041 0.0 637
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RKF3 Viun3g01146 Pkinase 2.6e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g01146 - - vra:106765729 1146.34