Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g01128 ATGATTGTGTCTGAAAAATTTTGTTGCCAACATATGTATGGTTTGATATCAGTTACCCCACTTTGGCGTAATGGACCAGAAGACAAACCAGTGTTGTGCAATGCATGCGGATCTAGATATAAGAAACGAGGAAGCCTTGGTCTTGAGGACTATCTGCCCAAGAATTTTCAACCTGAGTTTTTTGATAAATATAAAGATCAAAAGGCTGAGAAGAGTGAACGTCTATGGAGTACTAAGATTCCTACAAAGAAACGTTCAGAAGTGGTGTACAAGGAGATAACACCATTGGAGAGATTCCATATACGACTACTTAAGATGTCAAAAAATCACAGGAACCCAAACGAGACATCCTCGGAAGAAGTACTGTTGTTGAATAACGCAAATAACTTCATACCTAGTACTGAAATAGGCATAGGATGTGTTATTCTTAAATAA 435 0.377 MIVSEKFCCQHMYGLISVTPLWRNGPEDKPVLCNACGSRYKKRGSLGLEDYLPKNFQPEFFDKYKDQKAEKSERLWSTKIPTKKRSEVVYKEITPLERFHIRLLKMSKNHRNPNETSSEEVLLLNNANNFIPSTEIGIGCVILK 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g01128 144 PANTHER OSJNBB0038F03.10 PROTEIN 19 67 IPR044589 -
Viun3g01128 144 Pfam GATA zinc finger 19 45 IPR000679 GO:0006355|GO:0043565
Viun3g01128 144 SMART GATA_3 3 57 IPR000679 GO:0006355|GO:0043565
Viun3g01128 144 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 17 57 - -
Viun3g01128 144 CDD ZnF_GATA 19 44 IPR000679 GO:0006355|GO:0043565
Viun3g01128 144 Gene3D - 8 91 IPR013088 GO:0006355|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g01128 Viun-Chr3 7035127 7035717 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g01128 16 46 C2C2-Gata Transcription Factor Family AT5G47140 70.968 2.97e-11 58.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Viun3g01128 GATA 5.2e-11 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g01128 - - vun:114178599 301.982