Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g01121 ATGGCTTTGTCTTCTCAGTTACATCTTCATTTTGGCTTATTCATTATCCTCTTCAACCTTCACCTACACCACCTCTTCATTGCTGTATCAGCAGCCACTTTAAGCATCACCACTGACACACAAGCCTTGATCTCATTCAAGTCTCAACTCAGCAATCACACTCTCATTCCCTTATCTTCATGGAACCAAAGTTCATCCCCTTGCAATTGGACTGGTGTCCAATGTGACAACCTTGGCCAAAGGGTAACTGCCCTTAAGCTTTCAGGCTTGGGACTCTCAGGTCAATTAAGCCCTTATATTGGTAACCTCTCCTCTCTTCACTCCCTCCAATTGCAGAATAACCAACTCACTGGACCCATTCCTCACCAAATTGGTAACCTACTCAGTTTGAGAGTTCTAAATATCAGCTCTAACATGTTGGAAGGAAAACTTCCTTCCAACATCACCCTCTTGAATCAGCTCCAGATTCTTGATCTATCCTCAAACAACATTCTCAGCAAGATTCCTCAAGACATTGGCAGCTTGAAAAACCTTGAGGTTTTGAAGCTGGGAAAGAATAGCCTCTATGGTGCAATCCCAGCTTCTCTAGGAAACATTTCTTCTCTCAAAAATATCAGCTTTGGCACCAACTTTCTCACTGGTGGGATTCCCAGTGACTTGGGTAGGCTGCATGATTTGATTGAGCTTGATCTCATTCTTAACAATCTCAATGGGACCGTTCCACCTTCTGTGTATAACTTATCTTCCCTCGTTAACTTTGCCTTGGCTTCAAACTCTCTCGGGGGTGACATTCCTCAGGATGTTGGTCTCAGATTTCCAAAACTCATAGTGTTCAACATCTGCTTCAATTATTTCACAGGTGGAATTCCAGGGTCATTGCACAACCTCACCAACATTCAGGTCATTCGCATGGCTTCCAACTTTTTGGAAGGAACAGTGCCACCTGGTTTGGGAAATCTCCCATTTCTTCGCATGTATAATATTGGTTATAACAGAATAGTGAGTTCAGGTGTCAGAGGTTTAGACTTCATTACTTCTTTGACAAACAGTACTCGACTCAACTTTCTGGCAATTGATGGAAATATGCTGGAAGGTGTAATTCCTGAAACCATTGGCAATCTCTCCAAGGACCTGTCAACGTTATACATGGGACAGAATCGTTTCAATGGAAGCATACCTCGCTCCATTGGTCTTCTTAGTGGCTTGAAGTTGTTAAACATAAGCTACAATTCAATCTCTGGAGAAATCCCACATGAGTTAGGCCAGTTAACGGAACTACAAGAACTATCTCTGGCTGGAAATGAGCTATCAGGGGTTATTCCAGATTCCCTTGGTAATCTCCTCAAGTTAAACCTGATTGATTTCTCAAGAAACAAACTTGTGGGGACCATACCTACCAGTTTTGGGAATTTGCAAAGTCTGCTTTACATGGATTTATCAAGCAACCAACTCAATGGAAGCATTCCTACGGAAATCCTCAATCTCCCAACTTTGAGCAATGTTTTGAACTTGTCAATGAACTCTTTGGGTGGACCAATACCTCAAATTGGGAGATTGAGTGGTGTTGCCTCCATTGACTTTTCTAGCAACGAATTGGATGGTGGCATCCCCAGTTCATTCAGCAATTGTCTCAGCTTGGAAAATTTGTTTCTGAACAGGAATCAGCTCTCGGGTTCAATTCCAAAAGCTCTTGGAGAAGTGAGAGCCTTGGAAACTTTGGACCTATCCTCCAACCAACTCTCTGGAACCATTCCTGTTGAACTGCAAAATTTACAGGTGCTTAGGCTCTTAAACCTCTCGTACAATGACTTGGAAGGAGCCATTCCAAGTGGTGGAGTTTTCCAAAATCTCTCTGCTGTACATTTAGAAGGCAATGGAAATCTCTGCTTACAATCCCCATGTGTGAATCGTGGCGAAGGAAGAAAAGTAAGACGTTACATCATCGTAGCCATTGCAGTAGCATTGGTACTGTGTCTCACAATAGGCTCAATACTATATATAAAGAGCAGAAAGGTGAAGGTAGGATCATTATCATCATCATCATTATCAACATCTGAACAGCTAAAACCTCTTGCACCAATGATCTCTTATGATGAGCTTCGTTTGGCAACTGAGGAGTTCAACCAGGAAAACTTGCTAGGAGTTGGGAGCTTTGGCTCGGTTTACAAAGGCAATCTAAGTCACGGAACTACTGTTGCAGTGAAAGTTCTTGACATCCTAAGAACCGGTTCCTTAAAGAGTTTCTTTGCAGAATGTGAGGCTATGAAGAACTCGAGGCATCGAAATCTGGTTAAGCTCATCACATCGTGTTCTAGTGTTGACTTCAAAAACAATGACTTTCGGGCTCTGGTGTATGAGTATCTGTGCAATGGTAGCTTGGAAGATTGGATCAAGGGGAAGAGAAAGCATGCAAACGGAAATGGGTTGAACCTTATGGAGAGACTGAACATAGCAATAGATGTTGCTTGTGCATTGGACTACCTGCACAATGATAGTGAAATCCCAGTTGTGCACTGTGATTTGAAGCCTAGCAACATTCTCTTGGACGCAGACATGACTGCAAAGGTTGGAGACTTTGGATTGGCTAGGTTGCTTGTTCAAAGATCAACCAATCAAGTTTCCATTAGCTCCACTCATGCTCTCAGAGGCTCAATTGGCTACATAGCTCCAGAATATGGATGGGGAGAGAAAGCAAGTGCAGCTGGAGATGTGTATAGTTTTGGTATAGTGTTGCTGGAACTATTCTCTGGGAAAAGTCCAACTGATGAATGCTTCAGTGGAGGCATAAGCATAAGAAGATGGATGCATTCAGCATTGAAAGAGAAGACAATGGAAGCCATTGACCCTGAGTTGGTGTCCCTCATTTTGCATGATGACCCTTCAGAGGGACCAAATAACTTACAATTGTATTGTGTAGATGCAATTGTAGGAGTAGCCATCTGTTGCACTGCAGATAACCCAGATGAACGCATTGGCATTAGAGATGCTGTTAGCCAACTCAAAGCTTCCAGAGACTCTCTTTTGAATCTCTCTGATCACACTTCTGCTGCACATGCCAACTCTTACTTAAACGTTTCAATAAAATAA 3087 0.4263 MALSSQLHLHFGLFIILFNLHLHHLFIAVSAATLSITTDTQALISFKSQLSNHTLIPLSSWNQSSSPCNWTGVQCDNLGQRVTALKLSGLGLSGQLSPYIGNLSSLHSLQLQNNQLTGPIPHQIGNLLSLRVLNISSNMLEGKLPSNITLLNQLQILDLSSNNILSKIPQDIGSLKNLEVLKLGKNSLYGAIPASLGNISSLKNISFGTNFLTGGIPSDLGRLHDLIELDLILNNLNGTVPPSVYNLSSLVNFALASNSLGGDIPQDVGLRFPKLIVFNICFNYFTGGIPGSLHNLTNIQVIRMASNFLEGTVPPGLGNLPFLRMYNIGYNRIVSSGVRGLDFITSLTNSTRLNFLAIDGNMLEGVIPETIGNLSKDLSTLYMGQNRFNGSIPRSIGLLSGLKLLNISYNSISGEIPHELGQLTELQELSLAGNELSGVIPDSLGNLLKLNLIDFSRNKLVGTIPTSFGNLQSLLYMDLSSNQLNGSIPTEILNLPTLSNVLNLSMNSLGGPIPQIGRLSGVASIDFSSNELDGGIPSSFSNCLSLENLFLNRNQLSGSIPKALGEVRALETLDLSSNQLSGTIPVELQNLQVLRLLNLSYNDLEGAIPSGGVFQNLSAVHLEGNGNLCLQSPCVNRGEGRKVRRYIIVAIAVALVLCLTIGSILYIKSRKVKVGSLSSSSLSTSEQLKPLAPMISYDELRLATEEFNQENLLGVGSFGSVYKGNLSHGTTVAVKVLDILRTGSLKSFFAECEAMKNSRHRNLVKLITSCSSVDFKNNDFRALVYEYLCNGSLEDWIKGKRKHANGNGLNLMERLNIAIDVACALDYLHNDSEIPVVHCDLKPSNILLDADMTAKVGDFGLARLLVQRSTNQVSISSTHALRGSIGYIAPEYGWGEKASAAGDVYSFGIVLLELFSGKSPTDECFSGGISIRRWMHSALKEKTMEAIDPELVSLILHDDPSEGPNNLQLYCVDAIVGVAICCTADNPDERIGIRDAVSQLKASRDSLLNLSDHTSAAHANSYLNVSIK 1028
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g01121 1028 CDD STKc_IRAK 713 1001 - -
Viun3g01121 1028 Gene3D Phosphorylase Kinase; domain 1 688 787 - -
Viun3g01121 1028 SUPERFAMILY L domain-like 37 334 - -
Viun3g01121 1028 FunFam Inactive leucine-rich repeat receptor-like protein kinase 345 637 - -
Viun3g01121 1028 Pfam Leucine rich repeat N-terminal domain 38 76 IPR013210 -
Viun3g01121 1028 SUPERFAMILY L domain-like 378 629 - -
Viun3g01121 1028 Gene3D Transferase(Phosphotransferase) domain 1 788 1021 - -
Viun3g01121 1028 FunFam LRR receptor-like serine/threonine-protein kinase EFR 678 787 - -
Viun3g01121 1028 SUPERFAMILY Protein kinase-like (PK-like) 682 1000 IPR011009 -
Viun3g01121 1028 ProSitePatterns Protein kinases ATP-binding region signature. 713 735 IPR017441 GO:0005524
Viun3g01121 1028 Gene3D Ribonuclease Inhibitor 340 636 IPR032675 -
Viun3g01121 1028 PRINTS Leucine-rich repeat signature 570 583 - -
Viun3g01121 1028 PRINTS Leucine-rich repeat signature 591 604 - -
Viun3g01121 1028 Pfam Leucine rich repeat 545 604 IPR001611 GO:0005515
Viun3g01121 1028 Pfam Leucine rich repeat 425 484 IPR001611 GO:0005515
Viun3g01121 1028 Pfam Leucine rich repeat 105 164 IPR001611 GO:0005515
Viun3g01121 1028 ProSitePatterns Serine/Threonine protein kinases active-site signature. 836 848 IPR008271 GO:0004672|GO:0006468
Viun3g01121 1028 SMART LRR_typ_2 471 495 IPR003591 -
Viun3g01121 1028 SMART LRR_typ_2 591 616 IPR003591 -
Viun3g01121 1028 SMART LRR_typ_2 423 446 IPR003591 -
Viun3g01121 1028 SMART LRR_typ_2 103 127 IPR003591 -
Viun3g01121 1028 SMART LRR_typ_2 151 175 IPR003591 -
Viun3g01121 1028 SMART LRR_typ_2 567 590 IPR003591 -
Viun3g01121 1028 ProSiteProfiles Protein kinase domain profile. 707 1008 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g01121 1028 ProSiteProfiles Leucine-rich repeat profile. 153 175 IPR001611 GO:0005515
Viun3g01121 1028 FunFam Receptor protein kinase CLAVATA1 35 193 - -
Viun3g01121 1028 Pfam Protein kinase domain 708 924 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g01121 1028 Gene3D Ribonuclease Inhibitor 34 95 IPR032675 -
Viun3g01121 1028 Gene3D Ribonuclease Inhibitor 96 339 IPR032675 -
Viun3g01121 1028 SMART serkin_6 707 1008 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g01121 1028 PANTHER UNNAMED PRODUCT 20 117 - -
Viun3g01121 1028 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 788 1013 - -
Viun3g01121 1028 FunFam Putative leucine-rich repeat receptor-like protein kinase family protein 233 340 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g01121 Viun-Chr3 6982999 6986369 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g01121 38 1014 Receptor kinase-like Gene Family AT3G47570 42.242 0.0 710
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Viun3g01121 Pkinase 6.1e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g01121 - - gmx:102664710 1590.09