Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g01120 ATGGGATTGTCTTCTCAATTACTTGTTCATTTTGGTTTATTACTCATCCTCCTCCGACCTCAGCCACACTACCTCTTCAATGGTGTATCAGCAGCCACTTTAGGCATCACCACTGACACAGAAGCCTTGATCTCATTCAAGTCTCAACTCAGCAGTCACACTCTCATTCCCTTATCTTCATGGAACCAAACTTCATCCCCTTGCAATTGGACTGGTGTCCAATGTGACAACCTTGGCCAAAGGGTAACTTCCCTTAAGCTTTCAGGCTTGGGACTCTCAGGTCAATTAAGCCCTTATATTGGTAACCTCTCCTCTCTTCACTCCCTCCAATTGCAGAATAACCAACTCACTGGACCCATTCCTCACCAAATTGGTAACCTACTCAGTTTGAGAGTTCTAAATATCAGCTCTAACATGTTGGAAGGAAAACTTCCTTCCAACATCACCCACTTGAATCAGCTTCAGATTCTTGCTCTATCCTCAAACAAAATTCTCAGCAAGATTCCTCAGGACATTGGCAACTTGAAAAAGCTTCAGGCTTTGAAACTCGGAAGGAATAGCCTCTACGGTGCAATCCCAGCATCTCTAGGCAACATTTCTTCTCTCAAAAATATCAGTTTTGGCACCAACTTTCTCACTGGTGGGATTCCCAGTGACTTGGGTAGGCTGCATGATTTGATTGAGCTTGATCTCATTCTTAACCATCTCAATGGAACTGTTCCACCAGTTATATACAACTTATCTTCCCTTGTAAACTATGCGTTAGCTGGAAATTCTTTGTGGGGTGAGATTCCACAGGATGTTGGTCACAAACTTCCAAAACTTATAGTGTTCAATATCTGCTTCAATTATTTCACAGGTAGAATTCCAGGATCATTGCACAACATAACCAACATTCAGGTCATTCGCATGCGTTCCAACCTTTATGAAGGAACACTGCCACCAGGTTTGGGAAATCTCCCATTTCTTCACATGTATGATATTTCGTATAACAGGATAGTTAGTTCGGGTGTCAGAGGTCTAGATTTCATCACATCTCTGACTAACAGCACTCACCTGAAGTTTCTGGCAATTCAAGGAAATATGCTGGAAGGTGAAATTCCTGAAACCATTGGCAATCTCTCCAACCATCTCACAAATTTATACATGGGAACGAATCGTTTCAGCGGAAGCATACCCACTTCCATTGGTCGTCTTAGTGGCTTAAGGGTGTTAAACATAAGCTATAATTCAATCTCTGGAGAAATCCCACATGAGTTAAGCCAGTTAGTGGAACTACAAGAACTATCTCTGGCTGGAAATGAGATATCAGGCGTTATTCCAGATTCCCTTGATATTCTCCTCAAGTTAAACAAGATTGATTTGTCAAGAAACAAACTTGTGGGGATAATACCTACCGGTTTTGGGAATTTGCAAAGCCTGCTTTCCATGGACTTATCAAGCAACCAACTCAATGGAAGCATTCCTATGGAAATCCTCAATCTCCCAACTTTGAGAATTGTTTTGAACTTGTCAATGAACTCTTTGAGTGGTCCAATACCTCAAATTGGGAGATTGAGTGGTGTTGCCTCCATTGACTTTTCTAGGAACCAATTGGATGGTGGCATCCCCAGTTCATTCAGCAATTGTCTCAGCTTGCAAAAATTGTTTTTGAACAGGAATCAGCTTTCGGGTTCCATTCCAAATGCTCTTGGAGAAGTGAGAGCCCTGGAAACTTTGGACCTATCCACCAACCGACTCTCTGGAAGCATTCCTGTTGAACTTCAAAAATTACAGGTGCTTAGGCTCTTAAACCTCTCGTACAATGATTTAGAAGGAGCCATTCCAAGTGGTGGAGTTTTCCAAAATCTCTCTGATGTATATTTAGAAGGTAATGAAAATCTCTGCATGCAATCCCCTTGTGTGAATCATGGCGAAGGAAGAAATGTAAGACGTTACATCATCGTAGCCATTGCAGTAGCATTGGTACTGTGTCTCACAATTGGCTCAATACTATATATAAAGAGCAGAAAGGTGAAGGTAGCATCATCATCATTATCACCATCTGAACAGCTAAAACCTCTTGCACCAATGATCTCTTATGACGAGCTTCGTTTGGCAACTGAGGAGTTCAACCAGGAAAACACTCTAGGAGTTGGGAGCTTTGGCTCGGTTTACAAAGGCAATCTAAGTCACGGAACTACTGTTGCAGTGAAAGTTCTTGACACTCTAAGAACTGGTTCTCTAAAGAGTTTCTTTGCTGAATGTGAGGCAATGAAGAACTCGAGGCATCGAAATCTGGTTAAGCTCATCACATCGTGCTCTAGTGTTGACTTCAAAAATAATGACTTTCGGGCTCTGGTGTATGAGTATCTGTGCAATGGTAGCTTGGAAGATTGGATCAAGGGGAAGAGAAAGCATGCAAACGGAAATGGGTTGAACCTTATGGAGAGACTGAACATAGCAATAGATGTTGCTTGTGCATTGGACTACCTGCACAATGATAGTGAAATCCCAGTTGTGCACTGTGATTTGAAGCCTAGCAACATTCTCTTGGACGCAGACATGACTGCAAAGGTTGGAGATTTTGGATTGGCTAGGTTGCTTGTTCAAAGATCAACCAATCAAGTTTCCATTAGCTCCACTCATGCTCTCAGAGGCTCAATTGGGTACATACCTCCAGAATATGGATGGGGAGAGAAAGCAAGTGCAGCTGGAGATGTATATAGTTTTGGTATAGTGTTGCTGGAGCTGTTCTCTGGGAAAAGTCCAACTGATGAATGCTTCAGTGGAGGCATAAGCATAAGAAGATGGATGCATTCAGCATTGAAAGAGAAGACAATGGAAGCCATTGACCCTGAGTTGGTGTCCCTCATTTTGCATGATGACCCTTCAGAGGGACCAAATAACTTACAATTGTATTGTGTGGATGCAATTGTAGGAGTAGCCATATCTTGCACTGCAGACAACCCAGATGAACGCATTGGCATTAGAGATGCTGTTAGCCAACTCAAAGCTTCCAGATACTCTCTTTTGAATCACTCTGATCGCACTTCTGCTGCACATGCCAACTCTTACTTAAACGTTTCAATAAAATAA 3078 0.4224 MGLSSQLLVHFGLLLILLRPQPHYLFNGVSAATLGITTDTEALISFKSQLSSHTLIPLSSWNQTSSPCNWTGVQCDNLGQRVTSLKLSGLGLSGQLSPYIGNLSSLHSLQLQNNQLTGPIPHQIGNLLSLRVLNISSNMLEGKLPSNITHLNQLQILALSSNKILSKIPQDIGNLKKLQALKLGRNSLYGAIPASLGNISSLKNISFGTNFLTGGIPSDLGRLHDLIELDLILNHLNGTVPPVIYNLSSLVNYALAGNSLWGEIPQDVGHKLPKLIVFNICFNYFTGRIPGSLHNITNIQVIRMRSNLYEGTLPPGLGNLPFLHMYDISYNRIVSSGVRGLDFITSLTNSTHLKFLAIQGNMLEGEIPETIGNLSNHLTNLYMGTNRFSGSIPTSIGRLSGLRVLNISYNSISGEIPHELSQLVELQELSLAGNEISGVIPDSLDILLKLNKIDLSRNKLVGIIPTGFGNLQSLLSMDLSSNQLNGSIPMEILNLPTLRIVLNLSMNSLSGPIPQIGRLSGVASIDFSRNQLDGGIPSSFSNCLSLQKLFLNRNQLSGSIPNALGEVRALETLDLSTNRLSGSIPVELQKLQVLRLLNLSYNDLEGAIPSGGVFQNLSDVYLEGNENLCMQSPCVNHGEGRNVRRYIIVAIAVALVLCLTIGSILYIKSRKVKVASSSLSPSEQLKPLAPMISYDELRLATEEFNQENTLGVGSFGSVYKGNLSHGTTVAVKVLDTLRTGSLKSFFAECEAMKNSRHRNLVKLITSCSSVDFKNNDFRALVYEYLCNGSLEDWIKGKRKHANGNGLNLMERLNIAIDVACALDYLHNDSEIPVVHCDLKPSNILLDADMTAKVGDFGLARLLVQRSTNQVSISSTHALRGSIGYIPPEYGWGEKASAAGDVYSFGIVLLELFSGKSPTDECFSGGISIRRWMHSALKEKTMEAIDPELVSLILHDDPSEGPNNLQLYCVDAIVGVAISCTADNPDERIGIRDAVSQLKASRYSLLNHSDRTSAAHANSYLNVSIK 1025
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g01120 1025 ProSiteProfiles Protein kinase domain profile. 704 1005 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g01120 1025 FunFam Putative leucine-rich repeat receptor-like protein kinase family protein 233 340 - -
Viun3g01120 1025 Gene3D Phosphorylase Kinase; domain 1 686 784 - -
Viun3g01120 1025 SMART serkin_6 704 1003 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g01120 1025 SUPERFAMILY Protein kinase-like (PK-like) 680 997 IPR011009 -
Viun3g01120 1025 Gene3D Ribonuclease Inhibitor 36 194 IPR032675 -
Viun3g01120 1025 SMART LRR_typ_2 151 175 IPR003591 -
Viun3g01120 1025 SMART LRR_typ_2 447 470 IPR003591 -
Viun3g01120 1025 SMART LRR_typ_2 591 616 IPR003591 -
Viun3g01120 1025 SMART LRR_typ_2 471 495 IPR003591 -
Viun3g01120 1025 SMART LRR_typ_2 423 446 IPR003591 -
Viun3g01120 1025 SMART LRR_typ_2 103 127 IPR003591 -
Viun3g01120 1025 SMART LRR_typ_2 399 422 IPR003591 -
Viun3g01120 1025 SMART LRR_typ_2 567 590 IPR003591 -
Viun3g01120 1025 Gene3D Ribonuclease Inhibitor 339 637 IPR032675 -
Viun3g01120 1025 SUPERFAMILY L domain-like 376 630 - -
Viun3g01120 1025 CDD STKc_IRAK 710 998 - -
Viun3g01120 1025 SUPERFAMILY L domain-like 37 334 - -
Viun3g01120 1025 ProSitePatterns Protein kinases ATP-binding region signature. 710 732 IPR017441 GO:0005524
Viun3g01120 1025 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 785 1010 - -
Viun3g01120 1025 ProSitePatterns Serine/Threonine protein kinases active-site signature. 833 845 IPR008271 GO:0004672|GO:0006468
Viun3g01120 1025 Gene3D Transferase(Phosphotransferase) domain 1 785 1019 - -
Viun3g01120 1025 Gene3D Ribonuclease Inhibitor 195 338 IPR032675 -
Viun3g01120 1025 FunFam Inactive leucine-rich repeat receptor-like protein kinase 345 637 - -
Viun3g01120 1025 Pfam Leucine rich repeat 105 164 IPR001611 GO:0005515
Viun3g01120 1025 Pfam Leucine rich repeat 449 509 IPR001611 GO:0005515
Viun3g01120 1025 Pfam Leucine rich repeat 377 436 IPR001611 GO:0005515
Viun3g01120 1025 Pfam Leucine rich repeat 522 580 IPR001611 GO:0005515
Viun3g01120 1025 Pfam Protein kinase domain 704 993 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g01120 1025 FunFam Receptor protein kinase CLAVATA1 35 193 - -
Viun3g01120 1025 FunFam LRR receptor-like serine/threonine-protein kinase EFR 676 784 - -
Viun3g01120 1025 PANTHER OS04G0122200 PROTEIN 238 995 - -
Viun3g01120 1025 Pfam Leucine rich repeat N-terminal domain 38 76 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g01120 Viun-Chr3 6976684 6980389 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g01120 38 1011 Receptor kinase-like Gene Family AT3G47570 41.383 0.0 698
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Viun3g01120 Pkinase 5.9e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g01120 - - gmx:102664710 1594.33