Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g01117 ATGAAACAGTTGAAATTGGCTGCAGAATTTCACGCTATAGAGGATAATCTTCTTAGGCATAAGCCAGAAATGGAAATCACATTTGAGTCTTCTGCCAGTCCGCAGCATAAAAAGATATCAGCCAGATGGGATCCGGTTGAAGCATGCCGACCTATAATTGATGAAGCACCTGTGTTCTATCCAACTATTGAGGAGTTTGAAGACACACTTGGTTACTTAGCTAAGATTCGCCCCCAAGCTGAACCTTATGGCATATGTAGGATTGTCCCTCCAGTTTGCTGGGCACCACCATGCCCTCTTAAGGAGAAAGATTTATGGGAAATTGCAAAGTTTCCCACTCGTATCCAGCAAATTGATTTGCTTCAGAACAGGGAGCCCATGAGGAAGAAAATTAGGGGAAGGAAGCGAAAACGTAGAAGGCAATCAAAGATGGGAGCAGGTAAGAGAACTGCCAAATCAGGTTCTGAAGCTAATGTTGCTTCTGAGCCTGAGGAGAAGTTTGGATTCCAATCGGGGTCAGACTTCACACTTAAAGACTTTCAGCAATATGCTAAGGTTTTTAAAGACTGCTACTTTGGATTGAATGATGCCAATGAATATGGAAAAGTTAGCGATTATAATCACTGGCTGAAACGGGAGCCCTCTGTGGAAGACATTGAAGGTGAATACTGGAGAATAATAGAGCAACCAACAGATGAGGTTGAGGTGTATTATGGAGCTGACTTGGAAACTGGATCACTTGGAAGTGGCTTTCCTAAGACATCATCCTTAACTAACAATGATTCAGATAGATATGCTGTGTCTGGCTGGAATCTGAATAACTTCCCACGATTGCCAGGTTCTGCGTTATGTTTTGAAGGAAGTGATATCTCAGGAGTTCTAGTTCCATGGCTGTATGTTGGAATGTGCTTTTCCTCATTTTGCTGGCATGTTGAGGACCATCATCTCTATTCACTTAATTATCTGCATTGGGGTGACCCAAAGGTATGGTATGGAGTACCTGGAACCCATGCTCCAGGTTTGGAAGCTGCAATGAGAAAGCACTTGCCTGATTTATTTGAAGAACAACCAAATCTACTAAATGAATTGGTGACTCAGTTATCTCCTTCAATTCTTAAATCCGAGGGGGTGCCCGTACATCGCACTGTTCAGAATTCAGGTGAATTTGTTGTTACCTTTCCAAGGGCGTATCACTGTGGCTTCAATTGTGGCTTCAATTGCGCAGAGGCTGTGAATGTGGCTCCTGTTGATTGGCTTGTGCATGGCCAGAATGCTGTTGAGCTTTACAGTTTGCAGTGCCGTAAGACTTCATTGTCCCATGACAAGTTATTATTTGGATGTGCTCAGGAAGCCGTGTGTGCCCTTACAGAGGCAACTCGTCATGAAAAAGAAAATCTAAAATATATAAAATGGAGTAGTGCTTGTGGGAAAGATGGAGTTCTTACCAAGGCAATTAAGACAAGGATATCTATGGAAAAGGAGAGGCTTGGCTGTCTTCCCACTCATTTGAAGAAGCTTAGGATGAACAGTGAGTTTGATTTGTTTGAGGAAAGAGAATGCTTCTCTTGCTTCTATGACTTGCACCTATCCGCCGTAGGTTGCAAGTGCTCCCATACTTATTCGTGTCTCAAGCACTCACATTTGTTTTGCTCATGTGAAGTGGACAAAAGCTTTGTTCTGTTTCGTTATACCATGAATGAACTGAGTACATTGGTTGAGGCATTAGAAGGAGAAGCACATGCTATTGAAGTGTGGGCAAATAGAAACACTGGATTGGTATCTGCTAATGCTGAGGATGCTTGCATCTATAAACAAGACGCGGAGAGTTACAAAGGATGGAAAAGCTCAACATATTGTGCACGAACCAATTATAAGTCAAATTCAAATGTACCTAACAGTTCTTACAGCCACATTTCTGCAGAGCTAGTCCACTCAGAGTTTCACCGTGAAACTTATAGTGCACCATATGGCACTAAAGATTGTCAAAAAGATATTGTGAATGAAGAAAAATTGGTCATATACAATGAAGATAAGGTGAGGGAAGGTTCTCTGGATTTAAATATTGATGTTATGTTTGTTGAACGTGAAAGTCGTTTTCCGCATGCTGCTGAATACCATCATAATAAAAGTGTTCCATATGTTGGAAAAGTCTGCTATTCAGAGGTCAGAAAGAAACAAGACAACATGGAACCTGGGTTTGGATGTATAGCTTCCTTGGAGAAAGAATTTTCATCATGTTCAAGGGACGTTCAAAATTCTTGTACACTAGATGGTTATAAATTGTTTGGGGTGGATCTGCAGATGCATTCTGATTCGAAAGAACAACTCAACGGCGTATTTAAAATAGGTGATGTTGAAACTTCCAATGCAAGTGTATCTTTGATAAACCAAAATTTCTTAATGCACAAGATTAGTGTTTCTGTTGAGCCTGTGAATTTGGGCATTGCTATGTGTGGCAAGTTGTGGTGCAGTAAGCATGCAATATATCCAAAAGGATTCAAGAGTCGTGTTAAGTTCTTAAGCATTCTTGATCCACCAAGAATTTGTAACTATGTTTCTGAAGTCTATGATGCTGGATTTCTTGGGCCTCTTTTCAAGGTTACCATGGAAGAACATCCAAGTGAGATCTTCACAAACACCTCGGCAGATAAGTGCTGGGAGTCAGTTCTTTTGAGACTAAATCATGAAACCGAGAAGCTAAGGAATCAAGGTGAAAGAGAACTTCCTCCCTTGGAGCTTCTGAAAACCATTAATGGTCATAAAATGTTTGGATTCCTTTCACCTTCCATTATGCAGGCTATTGAAGCTCTGGACCCCAACCATCAATGCATCGAGTACTGGAATCACAAAGAAGTTGTCTCTGAGTCTTCAGAAAGTGGCATTGATGACTGTAAGCTCAGTCACGGTTCAAGTAACTCTCTAAGTGATGTCAAAACCAGACTTCTTGGTCCTGGTTTGAGAAATCTGGAACAAGATAGCAGAAGAAATTGTGATTCTTTCGAAGAGATGAAGTTGGTGGTAGAAGGGTTATTGAAAAAGGCTAGTGCTGAAGAATTAAGCGCCATGCACAAGTTATTCAGCTCTGATGCACAGTTCACCAAATGGAGAGTGGCATTTGTAACGCTGATTGAGGAAATCCAGAAAGCTTGTGCATAA 3156 0.4122 MKQLKLAAEFHAIEDNLLRHKPEMEITFESSASPQHKKISARWDPVEACRPIIDEAPVFYPTIEEFEDTLGYLAKIRPQAEPYGICRIVPPVCWAPPCPLKEKDLWEIAKFPTRIQQIDLLQNREPMRKKIRGRKRKRRRQSKMGAGKRTAKSGSEANVASEPEEKFGFQSGSDFTLKDFQQYAKVFKDCYFGLNDANEYGKVSDYNHWLKREPSVEDIEGEYWRIIEQPTDEVEVYYGADLETGSLGSGFPKTSSLTNNDSDRYAVSGWNLNNFPRLPGSALCFEGSDISGVLVPWLYVGMCFSSFCWHVEDHHLYSLNYLHWGDPKVWYGVPGTHAPGLEAAMRKHLPDLFEEQPNLLNELVTQLSPSILKSEGVPVHRTVQNSGEFVVTFPRAYHCGFNCGFNCAEAVNVAPVDWLVHGQNAVELYSLQCRKTSLSHDKLLFGCAQEAVCALTEATRHEKENLKYIKWSSACGKDGVLTKAIKTRISMEKERLGCLPTHLKKLRMNSEFDLFEERECFSCFYDLHLSAVGCKCSPXTYSCLKHSHLFCSCEVDKSFVLFRYTMNELSTLVEALEGEAHAIEVWANRNTGLVSANAEDACIYKQDAESYKGWKSSTYCARTNYKSNSNVPNSSYSHISAELVHSEFHRETYSAPYGTKDCQKDIVNEEKLVIYNEDKVREGSLDLNIDVMFVERESRFPHAAEYHHNKSVPYVGKVCYSEVRKKQDNMEPGFGCIASLEKEFSSCSRDVQNSCTLDGYKLFGVDLQMHSDSKEQLNGVFKIGDVETSNASVSLINQNFLMHKISVSVEPVNLGIAMCGKLWCSKHAIYPKGFKSRVKFLSILDPPRICNYVSEVYDAGFLGPLFKVTMEEHPSEIFTNTSADKCWESVLLRLNHETEKLRNQGERELPPLELLKTINGHKMFGFLSPSIMQAIEALDPNHQCIEYWNHKEVVSESSESGIDDCKLSHGSSNSLSDVKTRLLGPGLRNLEQDSRRNCDSFEEMKLVVEGLLKKASAEELSAMHKLFSSDAQFTKWRVAFVTLIEEIQKACA 1052
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g01117 1052 Gene3D - 808 945 - -
Viun3g01117 1052 Pfam jmjN domain 57 90 IPR003349 -
Viun3g01117 1052 SMART fyrc_3 865 960 IPR003889 GO:0005634
Viun3g01117 1052 ProSiteProfiles JmjN domain profile. 56 97 IPR003349 -
Viun3g01117 1052 Pfam F/Y-rich N-terminus 813 856 IPR003888 GO:0005634
Viun3g01117 1052 SMART JmjN_1 55 96 IPR003349 -
Viun3g01117 1052 ProSiteProfiles FYR domain FYRN motif profile. 801 859 IPR003888 GO:0005634
Viun3g01117 1052 MobiDBLite consensus disorder prediction 128 146 - -
Viun3g01117 1052 SMART fyrn_3 815 859 IPR003888 GO:0005634
Viun3g01117 1052 SMART cupin_9 264 430 IPR003347 -
Viun3g01117 1052 ProSiteProfiles JmjC domain profile. 264 430 IPR003347 -
Viun3g01117 1052 FunFam Putative lysine-specific demethylase JMJ16 807 945 - -
Viun3g01117 1052 SUPERFAMILY Clavaminate synthase-like 175 451 - -
Viun3g01117 1052 ProSiteProfiles FYR domain FYRC motif profile. 861 951 IPR003889 GO:0005634
Viun3g01117 1052 MobiDBLite consensus disorder prediction 126 163 - -
Viun3g01117 1052 Pfam JmjC domain, hydroxylase 297 413 IPR003347 -
Viun3g01117 1052 Pfam C5HC2 zinc finger 520 572 IPR004198 -
Viun3g01117 1052 Pfam F/Y rich C-terminus 863 950 IPR003889 GO:0005634
Viun3g01117 1052 Gene3D Cupin 41 414 - -
Viun3g01117 1052 PANTHER LYSINE-SPECIFIC DEMETHYLASE 51 837 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g01117 Viun-Chr3 6961403 6968302 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g01117 805 987 JUMONJI Transcription Factor Family AT1G30810 54.098 2.93e-52 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Viun3g01117 JmjC 1.4e-44 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g01117 K11446 - gmx:100784581 1794.63