Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g01114 ATGCAGAGCCAACTTGTGTGCAATGGTTGTAGGAGCCTTCTGCTTTACCCGAGAGGGGCAACCAATGTTTGTTGTGCATTGTGCAACACGATTACCTCTGTTCCTCCACCTGGGATGGAAATGTCTCAACTTTACTGTGGAGGCTGCAGGACGTTGCTAATGTACACTCGTGGAGCTACAAGTGTGAGATGTTCCTGCTGTCACACTGTAAACCTTGTTCCAGCAACTAATCAGGTAGCTCATGTCCACTGTGGGAACTGCCGGACAGCCCTCATGTATCCTTACGGAGCTCCCTCAGTCAAATGTGCTATTTGCCACTATATTACTAATACGAACAATGGACGGCTTCCAATCCCTGTCCATAGATCCAATGGGACAGCCAATGCTGGGACATTACCTTCTACTTCAACATCAATGCCTCAATCTCAAAGTCAGACAGTAGTAGTAGAAAATCCAATGTCTGTGGATTCAAGTGGGAAATTGGTGAGCAATGTTGTGGTCGGCGTCACAACAGATAAGAAATAA 525 0.4648 MQSQLVCNGCRSLLLYPRGATNVCCALCNTITSVPPPGMEMSQLYCGGCRTLLMYTRGATSVRCSCCHTVNLVPATNQVAHVHCGNCRTALMYPYGAPSVKCAICHYITNTNNGRLPIPVHRSNGTANAGTLPSTSTSMPQSQSQTVVVENPMSVDSSGKLVSNVVVGVTTDKK 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g01114 174 NCBIfam zinc finger domain, LSD1 subclass 81 109 IPR005735 -
Viun3g01114 174 NCBIfam zinc finger domain, LSD1 subclass 4 34 IPR005735 -
Viun3g01114 174 NCBIfam zinc finger domain, LSD1 subclass 43 73 IPR005735 -
Viun3g01114 174 PANTHER PROTEIN LSD1 2 173 IPR040319 -
Viun3g01114 174 Pfam LSD1 zinc finger 7 31 IPR005735 -
Viun3g01114 174 Pfam LSD1 zinc finger 46 70 IPR005735 -
Viun3g01114 174 Pfam LSD1 zinc finger 84 108 IPR005735 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g01114 Viun-Chr3 6951130 6955250 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Viun3g01114 zf-LSD1 8.4e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g01114 - - gmx:100527656 340.502