Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g01104 ATGCTAGAGCCTGGTGCTGCTGCTGCTGCTGGTGGTGGTGGTGAACGTCATTCAGAGGCCAGTTCGGAGACTCTCAATTCTTCCATGCTTGGAAGCTCCATGAGCAGCGAGAGTATTTGCAGCACCAGTTTCAGCCGTCTTTCCTTCGATCTCCTCCCGCCCTCGCCGGAGAGTCTCTCCCTTAAGCCTCACCGCTCCTCCGACTTCGCCTACTCCGCCATTCGCTCCGCCGCCTTCTGCCGCAAGGCCGCCCTCACCTTCCGCGACTTCCACCTCCTCCGTCGCATCGGCTCCGGCGACATCGGCACCGTCTACCTCTGCCGCCTCCGAAACCGTCAATTCAACAGCCCCGTAGAGGACGAGGAGGATGAGGCGTGCTGTTTGTACGCGATGAAGGTGGTGGACAAAGACGCAGTGGCATTGAAGAAGAAGTCGCAGAGAGCGGAAATGGAGAGAAAAATCCTGAAGATGCTGGACCATCCGTTCCTTCCTACTCTCTACGCGGAGTTCGAAGCCTCTCATTTCTCTTGCATCGTCATGGAGTTTTGCTCCGGTGGAGACCTTCACTCGCTGCGCTTCAAGCACCCTCACAACCGTCTCCCTCTCTCCTCCGCCAGATTTTATGCCGCGGAGGTGCTGGTGGCGTTGGAGTACTTACACATGCTGGGAATCATATACAGAGATTTAAAGCCCGAAAACGTGTTGGTCAGATCAGACGGTCACATCATGCTCTCTGATTTCGATCTCTCTCTTTGCTCGGATGCAATCCCAGCCGTTGAATCTTCAGATCCCTTACACAATCCATCGCCAAATGCATTACCTCATCACACTCATACTTACACTCGCACTCCCCCTCCCACTCGCTCGCATTCTTTTATCAGTCCATTCTCCTGCTTCTCCAAACGGGGTTTCCGGTCTCGTGACATGCGACTCGTCGAACCGAACCGGCTCTTCGTGGCCGAACCGGTTTCGGCCCGCTCCTGCTCCTTCGTCGGAACCCACGAGTACGTCTCGCCAGAGGTTGCCTCCGGCAAGTCGCACGGTAACGCCGTTGACTGGTGGTCGTTTGGGGTGTTTATCTACGAGCTTATATACGGTCGCACGCCGTACGCAGGTCCATCGAAGGAGGCTACGCTTCGGAATATCGTGAAGAAGCCCCTGGCGTTCCCCACTGCCACGCCCGCAAGCTGTCTTGAACTCCACGCGCGAGATTTGATATCCGGCTTGCTGAACAAAGACCCGGCGCGTCGACTCGGATCGAAGCGTGGCGCAGCTGACGTCAAGAAGCACCCCTTCTTCAAAGGGCTGAACCTGGCGCTGATTCGCATGCAGACGCCGCCCCTAGTGCCTGGCTCGAGAAGGACCAAAACGACGTCGATGTACCCTACGAAGGGTAAAAGTAACCGCAACCATGATAAACAGCAGGAGACGGCGTCGTTTGATTTTTTCTTCTGA 1455 0.5615 MLEPGAAAAAGGGGERHSEASSETLNSSMLGSSMSSESICSTSFSRLSFDLLPPSPESLSLKPHRSSDFAYSAIRSAAFCRKAALTFRDFHLLRRIGSGDIGTVYLCRLRNRQFNSPVEDEEDEACCLYAMKVVDKDAVALKKKSQRAEMERKILKMLDHPFLPTLYAEFEASHFSCIVMEFCSGGDLHSLRFKHPHNRLPLSSARFYAAEVLVALEYLHMLGIIYRDLKPENVLVRSDGHIMLSDFDLSLCSDAIPAVESSDPLHNPSPNALPHHTHTYTRTPPPTRSHSFISPFSCFSKRGFRSRDMRLVEPNRLFVAEPVSARSCSFVGTHEYVSPEVASGKSHGNAVDWWSFGVFIYELIYGRTPYAGPSKEATLRNIVKKPLAFPTATPASCLELHARDLISGLLNKDPARRLGSKRGAADVKKHPFFKGLNLALIRMQTPPLVPGSRRTKTTSMYPTKGKSNRNHDKQQETASFDFFF 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g01104 484 MobiDBLite consensus disorder prediction 447 473 - -
Viun3g01104 484 Gene3D Transferase(Phosphotransferase) domain 1 327 451 - -
Viun3g01104 484 SUPERFAMILY Protein kinase-like (PK-like) 70 454 IPR011009 -
Viun3g01104 484 FunFam protein kinase PINOID 183 251 - -
Viun3g01104 484 MobiDBLite consensus disorder prediction 264 288 - -
Viun3g01104 484 Gene3D Phosphorylase Kinase; domain 1 452 461 - -
Viun3g01104 484 MobiDBLite consensus disorder prediction 262 288 - -
Viun3g01104 484 Gene3D Transferase(Phosphotransferase) domain 1 183 250 - -
Viun3g01104 484 PANTHER FLIPPASE KINASE 1-RELATED 31 457 - -
Viun3g01104 484 ProSiteProfiles Protein kinase domain profile. 90 433 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g01104 484 MobiDBLite consensus disorder prediction 1 29 - -
Viun3g01104 484 MobiDBLite consensus disorder prediction 450 465 - -
Viun3g01104 484 SMART serkin_6 90 433 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g01104 484 FunFam protein kinase PINOID 2 88 182 - -
Viun3g01104 484 Pfam Protein kinase domain 90 250 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g01104 484 Pfam Protein kinase domain 327 433 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g01104 484 ProSitePatterns Serine/Threonine protein kinases active-site signature. 224 236 IPR008271 GO:0004672|GO:0006468
Viun3g01104 484 Gene3D Phosphorylase Kinase; domain 1 88 182 - -
Viun3g01104 484 FunFam serine/threonine-protein kinase D6PK-like 325 451 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g01104 Viun-Chr3 6890254 6892197 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g01104 31 483 AGC Kinase Gene Family AT2G34650 63.457 0.0 553
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Viun3g01104 Pkinase 4.8e-31 CL0016