Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g01071 ATGTTGGGAGAAGAGAGTAACAACGCCGACACCGGTGTTCACTGGAGAGCACATTCCAGATCAGTGTCTTGGACCGACCAGACTCCGGTGATCCGGAAACCGCCGCGATCCCTTCAGCCTCTTTGCATCAGAAAAGACAGCGTGAAGGAGTGGCCGAGCGCCGGCAGCGACGATCTCGAGGATTGGCTTCCGCCACCGACCCCAAGAGGGTCCACCAAAGGATCATCAAATTTGGGTTCGGGTTCGGGTTCGGGTCAATTTTTTCAGCTTAGGAGAGACAAGTTGGCTTTCTACGACAAGGAATGTTCGAAAATCGCGGAGCACGTGTACTTGGGAAGTGACACGGTGGCAAAGAACGAGGAGGTTTTGCGGCGGCACGGGATAACGCACGTGCTGAATTGCGTGGGGTTCGTTTGCCCAGAGTATTTCAAAAGCGACTTCGTCTACAAAACGCTATGGCTGCGGGACAGTCCCTCGGAGGACATCACAAGCATTCTCTACGACGTGTTCGATTATTTCGAGGATGTCCGACAACAGGGTGGGCGCGTGCTCGCACACTGCTGCCAGGGCGTGTCGCGCTCCACTTCATTGGTCATTGCGTATCTCATGTGGAGGGAGAACCAGAGCTTCGAGGACGCGTTTCACTTCGTCAAGAACGCGCGTGGCATCACCAATCCGAACATGGGTTTCGCTTGTCAGCTATTGCAGTGTCAGAAGCGCGTGCATGCTACACCCCCGAGTCCTAGTTCTGTGCTCAGAATGTATAGGATGGCTCCTCATTCTCCCTACGACCCTCTTCACCTTGTTCCTAAGATGGTAAACAACCCTTGCGCCCACGCGCTTGATTCGCGTGGGGCGTTCATCGTGCATGTTCCTTCTACTTTGTATGTGTGGGTTGGGAAGGAGTGTGGGTCGGTGATGCGTTGCAAGGCGCGTCATGCAGCTGCTCAGGTTGTTCGATATGAGAGAGCCACTGGGGAGATAGTTACCGTGGTGGAGGACGAAGAGGCTGAGGAGTTTTGGGTTGCTCTTTCTCACAGGCATGAAGAGGTGAAGAACGTGGAAACAACAATGGAGGTTGATGTAGGGATTGATCATCCCCGGAGAGTTGAGGAGTATGATTTGGACTTTGGAATTTTTCACAAGGCACTTGCTGGTGGGGTTGTTCCACCGTTTTCTTTGTCCAACGCTGGATCAGAAAATTGCCTCCCTTCTAAGGAAAATGGGTGGGGGAGATTCACTAGAAAGCTTTCTGGAGGTACCATGAAAGGGTTCACATCCTCCATTGAGGAGGAAAATCAGCACATGAATGTTGATCCTTTGCCTCCATCTTCTAAACCCTTTTACGATGAAGATGCATCTGACTCAAAGACTTGCCCTTTACTTCAAAAAGGTGTATCTTCATCTCCAGAGCCATTTTTGGCGTTCAAAAGGTCTAACCCGTCCATTGCAGAGCGCAGAGGGACCAACCTGCCACCTCGTACAATGCTACTCTCGACCGGGAAATCTTCCGGCAACAGTAAGATCAGAGTAAGATCTAAGTCAATCTCATTGCCTGCCCTGGATGATACTTTGTTGAGTGATGTTAGTTGCGAGCAATTCCACCGTGAAAACAGTGGAAAATAG 1626 0.5129 MLGEESNNADTGVHWRAHSRSVSWTDQTPVIRKPPRSLQPLCIRKDSVKEWPSAGSDDLEDWLPPPTPRGSTKGSSNLGSGSGSGQFFQLRRDKLAFYDKECSKIAEHVYLGSDTVAKNEEVLRRHGITHVLNCVGFVCPEYFKSDFVYKTLWLRDSPSEDITSILYDVFDYFEDVRQQGGRVLAHCCQGVSRSTSLVIAYLMWRENQSFEDAFHFVKNARGITNPNMGFACQLLQCQKRVHATPPSPSSVLRMYRMAPHSPYDPLHLVPKMVNNPCAHALDSRGAFIVHVPSTLYVWVGKECGSVMRCKARHAAAQVVRYERATGEIVTVVEDEEAEEFWVALSHRHEEVKNVETTMEVDVGIDHPRRVEEYDLDFGIFHKALAGGVVPPFSLSNAGSENCLPSKENGWGRFTRKLSGGTMKGFTSSIEEENQHMNVDPLPPSSKPFYDEDASDSKTCPLLQKGVSSSPEPFLAFKRSNPSIAERRGTNLPPRTMLLSTGKSSGNSKIRVRSKSISLPALDDTLLSDVSCEQFHRENSGK 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g01071 541 MobiDBLite consensus disorder prediction 69 85 - -
Viun3g01071 541 PANTHER MKPA PROTEIN 22 490 - -
Viun3g01071 541 MobiDBLite consensus disorder prediction 52 85 - -
Viun3g01071 541 Gene3D Protein tyrosine phosphatase superfamily 86 243 IPR029021 -
Viun3g01071 541 Pfam Dual specificity phosphatase, catalytic domain 109 239 IPR000340 GO:0008138|GO:0016311
Viun3g01071 541 SMART VILL_6 256 347 IPR007122 GO:0051015
Viun3g01071 541 MobiDBLite consensus disorder prediction 479 512 - -
Viun3g01071 541 MobiDBLite consensus disorder prediction 434 454 - -
Viun3g01071 541 SMART dsp_5 101 240 IPR020422 GO:0006470|GO:0008138
Viun3g01071 541 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 160 221 IPR000387 GO:0016311|GO:0016791
Viun3g01071 541 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 91 243 IPR029021 -
Viun3g01071 541 MobiDBLite consensus disorder prediction 493 512 - -
Viun3g01071 541 SUPERFAMILY Actin depolymerizing proteins 246 348 - -
Viun3g01071 541 CDD DSP 102 236 - -
Viun3g01071 541 ProSiteProfiles Dual specificity protein phosphatase domain profile. 101 243 IPR020422 GO:0006470|GO:0008138
Viun3g01071 541 Gene3D Severin 253 351 IPR029006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g01071 Viun-Chr3 6714549 6716817 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g01071 34 137 Protein tyrosine phosphatase (PTP) family AT3G55270 48.182 9.53e-26 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g01071 - - vra:106766435 985.326
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g01071 3 6714549 6716817 Viun3g01071 3 6714549 6716817 ECH