Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g01056 ATGGCAAAAACCAAAATTTCCAATCTCTTTGTCAATCTCACCAGTCATTACATGCTTCCTAAATCCAATACTATAAGGCAAACACTTGTAGACCGACCAAGTTCCCACAAAGATCGCTTTCCCTTTTCACTCTTTCGATTCTTTCGCCGCTTCATTCCTTCAAGAAAACTTGACGGAGGCTCAAAAACCGAGGACGAGGAGAAAGTCTACTCTTGGTTATACACTTTGGCTCAGACCGACAAGAACTTGGTCTTTGAGTACGTTAGGTCCACTGAAAGAGGCTTAAGTTTCACAGAAGCAGAGAGGAGACTTAGGGAAAATGGGCCAAATGTTCCACTTGAGTATTCCTTTCCAAGATGGTGGAATCTTCTATGGAACGCTCTTTTCCACCCTTTTAACATCATTCTGATTATTCTGTCAGTTATGTCATTCATTGCCCGTGACAGTCCAAATGGATTTATCATGCTAGTGTTGGTTTTCATCAGTGTCACCCTCCGTTTCTATCAGGAATACAGCAGCTCAAAAGCAGCAATGAAGCTTTCAGAATTTGTAAAATGTCCAATAAAAGTTCAAAGATGCGCTGGTAGAGTTGTTCAGAAAGAACTTGTTGTTCAAGTGGATCATAGGGATGTAGTTCCTGGTGATATTGTAATTTTTGAACCTGGAGACCTCTTTCCTGGAGATATCAGATTATTATCTTCAAAACAACTTGTTGTAAGCCAGGCCTCACTAACTGGGGAATCTTGGACAACAGACAAAACTGCTGATATCAGAGAAGACTACAACACTCCTTTGTTGGATTTAAAAAACATCTGTTTCATGGGCACAAACGTGGTATCAGGCACTGGAACAGGTCTAGTGGTTTCAACCGGATCCAAGACTTACATGAGCACCATGTTTTCAATAGTTGGGAAGAAGAAGCCACCAGATGATTTTGAAAAGGGTCTCAGATGGATATTTTACTTGCTTATTTCTGTCATTCTAGTAGTTGTTACCATCATGTTTGTGGTAACTTACTTGACATCTCTTAATTTGACCCAAAGCGTTCTTTTTGCCATCTCTGTTGCATCTGTCCTGAATCCTCAAATGCTTCCCCTCATCATCAACACATGCCTTGCAAAAGGAGCACTTGCTATGGCCAAAGACAGGTGCATAGTAAAGAGTTTAACATCTATACGCGATATGGGATCAATGGATATTCTTTGTATTGACAAGACAGGCTCCCTTACAATGAATCATGCAATCATGGTTAATCATCTTGATTACAGGGGTTTACCCCAAGAAAAAGTTTTGCGCTATGCCTTCCTCAACTCTTACTTTAAGACCGATCAGAAGTATCCTCTGGATGATGCTATTCTGGCATTTGTATATTCAAATGGATTCAGGTTTCGGCCATCAATGTGGAGGAAGATAGATGAGATTCCTTTTGACTTCATCAGAAGAAGAGTATCTGTCATCATAGAAACAGAAGACAGACACTCAGAATTCTTTGGCCGGTTCATGGTAACAAAAGGAGCACTGTTAGAAGTATTGAAAGTTTGTTCTTTTATTGAGAATTTCGAACAAGATGAAATTTCCCCCTTCTCTTCCGATGATTATCAGCGTATTTTGAATCTCTCAGAAGATATTAGCAATGAAGGGTTAAGGATTCTAGGAGTAGCTATAAGGAAGCTGGAAATGGAAATGCCGCAAACGTGTGAAACAAGTAACGGAAGCAGGAGAGAAGACGAGGATGTCGAAAAAGACATGGTGTTCCTTGGTCTGATAACATTTTTCGACCCACCTAAGGACACAGCAAAGCAAGCACTGTGGCGGTTGTGTGAGAAGGGAGTGAAAGCAAAGGTTTTAACTGGCGATTCCCTCTCCCTGACAACAAGGGTATGCAGAGAAGTTGGAATAAGCATCGATCATGTAATAACAGGTCCTGAACTAGAGCTACTTGACCAAGACACGTTTCATGAGACAGTGAAAAGAGCCACAGTACTAGCACGTCTCACTCCAATTCAGAAACTCCATGTGGTGCAATCCTTGCAAACGGTTGGAAACCATGTTGTTGGGTTCTTGGGAGATGGAGTGAATGATTCACTGGCTTTGGATGCTGCGAATGTAAGCATTTCTGTGGATTCAGGAGTGGCCATTGCAAAAGACATGGCAGATATTATCTTGCTTGAGAAAGATCTGAACGTGCTTGTTGCGGGAGTGGAGCACGGAAGACTGAGTTTTGGCAACACAATGAAGTATGTTAAGATGTCAGTGATTGCTAACTTGGGAAGTGTGATTTCACTGCTGATAGCAACACTGGTGTTCAAGTACGAGCCCTTAACTTCTACACAGCTTCTGACTCAGAATTTCATCTACAGTGTGGGACAGATTGCCATAGCCTGGGACAAGATGGATGAAGAGTATGTGAAGACACCTCACAAATCCTCAGAAAGAGGGTTGTCGATGTTCATAGTGTGGAATGGATCAGTGTGCACTCTGTGTGATGTTGCAACACTCATGCTTCTTTGGTTTTATTACAAGGCTTACACTGATGTGACTCAGAAGTTTTTTCATACAGCTTGGTTCATTGAAGGTCTTCTGTTGCAGACCCTGATCATCCACTTGATCAGGACTGAGAAAATCCCTTTCATGCAGGAGGTTGCATCTTGGCCTGTGATTTTCTCCACTGTTGTCACTTCTGCCATTGGAATTGCTCTTCCTTTCACACCCATTGGGAAGGTCATGGGATTCTCCCTTCTTCCTCTCTCATATTTCGGACTTTTGTTTCTTCTTTTTCTTGGCTATTTTATAGTTGGCCAGCTGGTTAAGAGACTTTACATATTGGTTTATAAGAGGTGGCTTTGA 2847 0.4173 MAKTKISNLFVNLTSHYMLPKSNTIRQTLVDRPSSHKDRFPFSLFRFFRRFIPSRKLDGGSKTEDEEKVYSWLYTLAQTDKNLVFEYVRSTERGLSFTEAERRLRENGPNVPLEYSFPRWWNLLWNALFHPFNIILIILSVMSFIARDSPNGFIMLVLVFISVTLRFYQEYSSSKAAMKLSEFVKCPIKVQRCAGRVVQKELVVQVDHRDVVPGDIVIFEPGDLFPGDIRLLSSKQLVVSQASLTGESWTTDKTADIREDYNTPLLDLKNICFMGTNVVSGTGTGLVVSTGSKTYMSTMFSIVGKKKPPDDFEKGLRWIFYLLISVILVVVTIMFVVTYLTSLNLTQSVLFAISVASVLNPQMLPLIINTCLAKGALAMAKDRCIVKSLTSIRDMGSMDILCIDKTGSLTMNHAIMVNHLDYRGLPQEKVLRYAFLNSYFKTDQKYPLDDAILAFVYSNGFRFRPSMWRKIDEIPFDFIRRRVSVIIETEDRHSEFFGRFMVTKGALLEVLKVCSFIENFEQDEISPFSSDDYQRILNLSEDISNEGLRILGVAIRKLEMEMPQTCETSNGSRREDEDVEKDMVFLGLITFFDPPKDTAKQALWRLCEKGVKAKVLTGDSLSLTTRVCREVGISIDHVITGPELELLDQDTFHETVKRATVLARLTPIQKLHVVQSLQTVGNHVVGFLGDGVNDSLALDAANVSISVDSGVAIAKDMADIILLEKDLNVLVAGVEHGRLSFGNTMKYVKMSVIANLGSVISLLIATLVFKYEPLTSTQLLTQNFIYSVGQIAIAWDKMDEEYVKTPHKSSERGLSMFIVWNGSVCTLCDVATLMLLWFYYKAYTDVTQKFFHTAWFIEGLLLQTLIIHLIRTEKIPFMQEVASWPVIFSTVVTSAIGIALPFTPIGKVMGFSLLPLSYFGLLFLLFLGYFIVGQLVKRLYILVYKRWL 948
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g01056 948 SUPERFAMILY Calcium ATPase, transmembrane domain M 90 945 IPR023298 -
Viun3g01056 948 Gene3D - 186 290 - -
Viun3g01056 948 Gene3D - 151 899 - -
Viun3g01056 948 PANTHER CATION TRANSPORTING ATPASE 81 938 - -
Viun3g01056 948 Pfam haloacid dehalogenase-like hydrolase 398 702 - -
Viun3g01056 948 NCBIfam magnesium-translocating P-type ATPase 67 947 IPR006415 GO:0015444|GO:0015693|GO:0016020
Viun3g01056 948 SUPERFAMILY Calcium ATPase, transduction domain A 196 302 IPR008250 -
Viun3g01056 948 SMART Cation_ATPase_N_a_2 75 148 IPR004014 -
Viun3g01056 948 Pfam Cation transporter/ATPase, N-terminus 86 143 IPR004014 -
Viun3g01056 948 NCBIfam HAD-IC family P-type ATPase 654 767 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Viun3g01056 948 NCBIfam HAD-IC family P-type ATPase 155 444 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Viun3g01056 948 Gene3D - 399 725 IPR023214 -
Viun3g01056 948 Pfam E1-E2 ATPase 196 381 - -
Viun3g01056 948 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 397 595 IPR023299 GO:0000166
Viun3g01056 948 SUPERFAMILY HAD-like 579 736 IPR036412 -
Viun3g01056 948 Gene3D - 414 592 IPR023299 GO:0000166
Viun3g01056 948 PRINTS Magnesium-transporting ATPase signature 901 922 IPR006415 GO:0015444|GO:0015693|GO:0016020
Viun3g01056 948 PRINTS Magnesium-transporting ATPase signature 746 761 IPR006415 GO:0015444|GO:0015693|GO:0016020
Viun3g01056 948 PRINTS Magnesium-transporting ATPase signature 315 331 IPR006415 GO:0015444|GO:0015693|GO:0016020
Viun3g01056 948 PRINTS Magnesium-transporting ATPase signature 816 832 IPR006415 GO:0015444|GO:0015693|GO:0016020
Viun3g01056 948 PRINTS Magnesium-transporting ATPase signature 796 809 IPR006415 GO:0015444|GO:0015693|GO:0016020
Viun3g01056 948 PRINTS Magnesium-transporting ATPase signature 851 872 IPR006415 GO:0015444|GO:0015693|GO:0016020
Viun3g01056 948 PRINTS Magnesium-transporting ATPase signature 436 449 IPR006415 GO:0015444|GO:0015693|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g01056 Viun-Chr3 6600963 6605147 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g01056 93 840 Primary Pumps ATPases(2) AT1G10130 25.557 2.74e-63 230
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g01056 K01531 - pvu:PHAVU_002G260400g 1674.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g01056 3 6600963 6605147 Viun3g01056 3 6600963 6605147 ECH