Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g01055 ATGTCTCCTCCTAAAACCCCAGATGTCGGTGAACCCAAACATCCCCTAGAAGAACATCATAGACATGTTGTTCATCTAGCGTTGGTTTTGACAGCATGCATAGTTGGCGTGTTCATGTTTCTCTTCACCGTCTCCACACTCATAAGGTACTTTTATTCCAGGAGATATAACCGCAGACCCAATGGAACAAGAGACACGCCCATATTGTTCGATTTGAACGGAGATTCTCCCACTGCGAACAACGACGATGACGTGGCGGCGGACCAAGATGACGACTTGGCGCCGGTCCACCACGTGTGGTACATCCGCACCGCCGGTCTCCAACAGTCGCTGATAGACTCCATCACCGTCTTCAAATACAGGAAAAACGAAGGAATCATAGACAGCTCCGAATGTTCCGTGTGCCTCGGGGAGTTCCAACACGACGAAACCCTCAGGTTGTTGCCCAAGTGCAGCCACGCGTTCCACGTGCCTTGCATTGACACGTGGCTCCGGTCGCACAAAAACTGTCCCCTGTGTCGCGCGCCTGTGGTCCACGATGAAACTGGAGCCGTCGATCAGAATGTTCAGATTGGTTCACACGTGTCTGTGTCTGATCATCAGAATCAGAACCGTGAGGTTCCGGCGGAGGATTCTGATGATGGGGCTGGATTAGAAGATGGTGGTGGTTCTGGTGAGTCCTCCGGTGGAACAGAAACGCAGCCTCTGAGAAGATCGGTTTCGATGGATGTTTCTTCTGCTTCAAATTCAATGCTTCGTGATGTGGGAGTGGATATAGACACCCCTTATGGAGAAAAAGTGAGTTCCAGTAAGATTCATATGAGTATCACAGAGAAACATGGAAGTTCAAGTTCAAGTTCAAGTTCAAGTTCAACCACGATTCACAAGTTGGCTTCATTTGGACGTGCGTTGCAAAAGGGACCAGTCTCAATGAGAAGATCGTTTTCACATAACAGGAAATTTTTGTTCTCCACACACTACAGGAGTCAGAGTTCTACTCTTCCATTGTGA 1011 0.4886 MSPPKTPDVGEPKHPLEEHHRHVVHLALVLTACIVGVFMFLFTVSTLIRYFYSRRYNRRPNGTRDTPILFDLNGDSPTANNDDDVAADQDDDLAPVHHVWYIRTAGLQQSLIDSITVFKYRKNEGIIDSSECSVCLGEFQHDETLRLLPKCSHAFHVPCIDTWLRSHKNCPLCRAPVVHDETGAVDQNVQIGSHVSVSDHQNQNREVPAEDSDDGAGLEDGGGSGESSGGTETQPLRRSVSMDVSSASNSMLRDVGVDIDTPYGEKVSSSKIHMSITEKHGSSSSSSSSSSTTIHKLASFGRALQKGPVSMRRSFSHNRKFLFSTHYRSQSSTLPL 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g01055 336 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 107 183 IPR013083 -
Viun3g01055 336 SUPERFAMILY RING/U-box 117 180 - -
Viun3g01055 336 MobiDBLite consensus disorder prediction 226 247 - -
Viun3g01055 336 ProSiteProfiles Zinc finger RING-type profile. 132 174 IPR001841 -
Viun3g01055 336 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 24 193 IPR044675 -
Viun3g01055 336 Pfam Ring finger domain 131 174 IPR001841 -
Viun3g01055 336 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 33 - -
Viun3g01055 336 CDD RING-H2_EL5-like 131 174 - -
Viun3g01055 336 MobiDBLite consensus disorder prediction 195 247 - -
Viun3g01055 336 FunFam RING-H2 finger protein ATL54 107 180 - -
Viun3g01055 336 SMART ring_2 132 173 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g01055 Viun-Chr3 6595638 6597187 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g01055 97 242 C3H Transcription Factor Family AT5G10380 50.633 5.07e-40 141
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g01055 - - gmx:102663026 325.479
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g01055 3 6595638 6597187 Viun1g03369 1 41039739 41040946 PCT