Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g01054 ATGAAGAGACTTGGCAGCTCCGATTCTCTGGGTGCTCTCATGACCATTTGTCCAACAACAGACGAACACAGTCCGAGGAACAACCACGTGTATGGCAGGGAGTTCCAGTCTATGTTGGAAGGACTAGACGATGAAGGGTGTGTGGAGGAACCAGGACACCACGCGGAGAAGAAACGAAGACTGAGCGTGGATCAGGTGAAGGCTTTGGAGAAGAACTTCGAAGTAGAGAACAAACTGGAACCTGACAGAAAGGTGAAGCTGGCACAAGAACTTGGGTTGCAACCAAGACAAGTTGCGGTTTGGTTCCAAAACCGTCGAGCCAGATGGAAAACAAAGCAATTGGAAAGAGACTATGGAGTCCTCAAAGCCAATTATGATTCCCTCAAACTCAACTACGACACACTCCAACAAGACAACGAAGCCTTGCTCAAAGAGATAAAGGAATTGAAATCAAGGTTGCTGCTGCAGGAAGAGAGCAACACTGAAAGCGATGTTTCGGTGAAGGAGGAGATGATAACACTGCAAGATAGTAACCCACTTTGTGAAACCGCCATTCCTGGATCCGAATGCTTCAACAAGAGTGATGAGGTTTTAGGGGGTTTCAAAGACGGGTCTTCCGACAGCGACTCCAGCGCGATCTTGAACGAAGAGAATGCCAACAACAACGACAACAGTCCCAACAACGCCACGATTTCATCTTCTGGGGTTATGCAAAGTCAGAGCTTTTTGTCTTCGTCTTCTCCGATGAACTGTTTCCAGTTCCAGAAACAGTTTCCGCAGTACGTGAAGATGGAGGAGCATAATTTTCTGAGCGCGGACGAGGCGTGCAATTTCTTCTCGGATGAACAAGCGCCCACGCTGCAGTGGTACTGTTCAGAGGAGTGGAGTTAA 891 0.4815 MKRLGSSDSLGALMTICPTTDEHSPRNNHVYGREFQSMLEGLDDEGCVEEPGHHAEKKRRLSVDQVKALEKNFEVENKLEPDRKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANYDSLKLNYDTLQQDNEALLKEIKELKSRLLLQEESNTESDVSVKEEMITLQDSNPLCETAIPGSECFNKSDEVLGGFKDGSSDSDSSAILNEENANNNDNSPNNATISSSGVMQSQSFLSSSSPMNCFQFQKQFPQYVKMEEHNFLSADEACNFFSDEQAPTLQWYCSEEWS 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g01054 296 SMART HOX_1 55 116 IPR001356 GO:0003677
Viun3g01054 296 Pfam Homeodomain 57 110 IPR001356 GO:0003677
Viun3g01054 296 MobiDBLite consensus disorder prediction 205 233 - -
Viun3g01054 296 FunFam Homeobox-leucine zipper protein HAT5 50 114 - -
Viun3g01054 296 PRINTS Lambda-repressor HTH signature 92 108 IPR000047 GO:0003677
Viun3g01054 296 PRINTS Lambda-repressor HTH signature 83 92 IPR000047 GO:0003677
Viun3g01054 296 ProSitePatterns 'Homeobox' domain signature. 87 110 IPR017970 GO:0000981|GO:0006355
Viun3g01054 296 ProSiteProfiles 'Homeobox' domain profile. 52 112 IPR001356 GO:0003677
Viun3g01054 296 Coils Coil 125 159 - -
Viun3g01054 296 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 49 290 IPR045224 GO:0003700
Viun3g01054 296 CDD homeodomain 57 113 IPR001356 GO:0003677
Viun3g01054 296 Gene3D - 52 119 - -
Viun3g01054 296 Pfam Homeobox associated leucine zipper 112 153 IPR003106 GO:0006355|GO:0043565
Viun3g01054 296 SUPERFAMILY Homeodomain-like 38 114 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g01054 Viun-Chr3 6553871 6556118 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g01054 1 296 Homeobox Transcription Factor Family AT4G40060 48.903 8.68e-84 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Viun3g01054 Homeodomain 3.2e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g01054 K09338 - gmx:100796213 459.144
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g01054 3 6553871 6556118 Viun3g01054 3 6553871 6556118 ECH
Viun3g01054 3 6553871 6556118 Viun1g03365 1 41002865 41005197 PCT