Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g01039 ATGGCAATAACACCTTTTAGTAGTACATCTGCTGCACAATGGGGAATTCATCCTCAGCTCTTAGTAAGATCCAGCATTACAGGCAAGGTTGCATCATCCAGCCACAAGGTAACCTTCATGGCTGCATCAAGTTCAAGCTTTTTTTCTCGAGATTCCACACTACTCAATGTGGGTGCACCCCAAACTTTTAATCATCGCAAGGGATCAAGGTTGATTGTTAGAGCTGATGCAGATTATTATTCTGTCCTTGGGGTTTCAAGAAATGCTAGCAAATCTGAAATTAAGAGCGCATACCGGAAGCTTGCTCGGAATTATCATCCAGATGTCAACAAAGATCCTGGAGCTGACCAAAAGTTTAAAGAAATTAGCAACGCATATGAGGTGTTATCAGATGATGAGAAACGATCCATATATGACAGATTTGGAGAGGCTGGACTTAAAGGTTCTGGAATGGGGATGGGGGACTTCAGCAATCCATTTGATCTGTTCGAATCACTGTTTGAGGGCATGAATCGTGGTCCAGGTTCCAGAGGTTCTTGGAACGGTGCAATTGATGGTGAAGATGAGTATTACAGTCTTGTTTTGAACTTCAAAGAAGCAGTTTTTGGCATAGAAAAGGAGATAGAGATAAGCCGATTAGAGAGCTGCGGAACTTGCAATGGCTCAGGGGCTAAACCAGGGACTACACCAACCAGATGCAGCACTTGCGGAGGTCAAGGACGAGTTGTCTCTTCAACAAGAACTCCATTAGGTATCTTCCAGCAGTCAATGACATGCTCTTCATGCAATGGGAGTGGCGAAATTTCAACACCTTGCAATACATGTTCTGGGGATGGTCGGGTGAGGAAATCGAAGAGGATAAGTCTGAAGGTCCCAGCTGGTGTGGACTCTGGTAGTCGTCTAAGGGTCCGAAATGAGGGGAATTCTGGAAGGAGAGGTGGTTCCCCTGGCGACCTCTTCGTAGTTATTGAGGTTATCCCAGATCCTGTACTTAAACGAGATGACACCAACATTTTGTACACCTGCAAGGTTTCGTATATTGATGCAATCCTGGGGACTACAACTAAGGTTCCTACTGTAGACGGAATGGTGGACTTGAAAATCCCTGCTGGGACACAACCCAACACAACACTTGTTATGGCTAAGAAAGGTGTTCCCTTCCTTAATAAAAACAATATGAGGGGTGATCAGTTGGTTCGTGTGCAAGTTGAAATCCCTAAAAGACTCAGCAATGATGAGAGAAAGCTTATTGAGGAACTTTCTGATTTAAGCAAAGGCAAGACTACCACAGGTAGGAGATAG 1302 0.4439 MAITPFSSTSAAQWGIHPQLLVRSSITGKVASSSHKVTFMAASSSSFFSRDSTLLNVGAPQTFNHRKGSRLIVRADADYYSVLGVSRNASKSEIKSAYRKLARNYHPDVNKDPGADQKFKEISNAYEVLSDDEKRSIYDRFGEAGLKGSGMGMGDFSNPFDLFESLFEGMNRGPGSRGSWNGAIDGEDEYYSLVLNFKEAVFGIEKEIEISRLESCGTCNGSGAKPGTTPTRCSTCGGQGRVVSSTRTPLGIFQQSMTCSSCNGSGEISTPCNTCSGDGRVRKSKRISLKVPAGVDSGSRLRVRNEGNSGRRGGSPGDLFVVIEVIPDPVLKRDDTNILYTCKVSYIDAILGTTTKVPTVDGMVDLKIPAGTQPNTTLVMAKKGVPFLNKNNMRGDQLVRVQVEIPKRLSNDERKLIEELSDLSKGKTTTGRR 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g01039 433 ProSitePatterns Nt-dnaJ domain signature. 119 138 IPR018253 -
Viun3g01039 433 FunFam Molecular chaperone DnaJ 208 284 - -
Viun3g01039 433 FunFam Putative Mitochondrial DnaJ chaperone 272 321 - -
Viun3g01039 433 Gene3D - 186 321 - -
Viun3g01039 433 CDD DnaJ_C 187 409 - -
Viun3g01039 433 Pfam DnaJ domain 78 139 IPR001623 -
Viun3g01039 433 FunFam Chaperone protein dnaJ 1, mitochondrial 326 433 - -
Viun3g01039 433 SUPERFAMILY HSP40/DnaJ peptide-binding domain 331 417 IPR008971 GO:0006457|GO:0051082
Viun3g01039 433 Gene3D - 216 279 - -
Viun3g01039 433 SMART dnaj_3 77 134 IPR001623 -
Viun3g01039 433 Gene3D - 326 432 - -
Viun3g01039 433 PRINTS DnaJ domain signature 80 98 IPR001623 -
Viun3g01039 433 PRINTS DnaJ domain signature 114 134 IPR001623 -
Viun3g01039 433 PRINTS DnaJ domain signature 98 113 IPR001623 -
Viun3g01039 433 PRINTS DnaJ domain signature 134 153 IPR001623 -
Viun3g01039 433 CDD DnaJ_zf 216 279 IPR001305 GO:0031072|GO:0051082
Viun3g01039 433 CDD DnaJ 78 131 IPR001623 -
Viun3g01039 433 SUPERFAMILY Chaperone J-domain 75 170 IPR036869 -
Viun3g01039 433 Gene3D DnaJ domain 75 178 IPR036869 -
Viun3g01039 433 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 203 283 IPR036410 -
Viun3g01039 433 ProSiteProfiles dnaJ domain profile. 78 142 IPR001623 -
Viun3g01039 433 Pfam DnaJ C terminal domain 191 406 IPR002939 -
Viun3g01039 433 SUPERFAMILY HSP40/DnaJ peptide-binding domain 184 338 IPR008971 GO:0006457|GO:0051082
Viun3g01039 433 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 42 428 - -
Viun3g01039 433 NCBIfam molecular chaperone DnaJ 78 422 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Viun3g01039 433 Hamap Chaperone protein DnaJ [dnaJ]. 75 429 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Viun3g01039 433 Pfam DnaJ central domain 216 279 IPR001305 GO:0031072|GO:0051082
Viun3g01039 433 FunFam Chaperone protein dnaJ A6 chloroplastic 75 178 - -
Viun3g01039 433 ProSiteProfiles Zinc finger CR-type profile. 203 284 IPR001305 GO:0031072|GO:0051082
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g01039 Viun-Chr3 6419459 6426867 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g01039 79 139 C2H2 Transcription Factor Family AT1G74250 46.269 3.21e-09 57.0