Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g01033 ATGCCAAACAACATCAACTTCAACAACGATTCTCTGCATGTTTCCCTTCGCAACCTCTCCCAACTCAGCACACGAATGGATTCGCTTCAGAGCTTTGTCTCCCAATCCATTCAATCCCACACTCTCCTCACGCACCACCAAATGAACATCGTATCCAACGAGATCCTAACCGCAATTCGCCACGTCATCACCAACGGCGCAGCCTTAGTCGCCGCGTCGGAGAACGTGCTTCCCTTCTCGGAGACTCCCAACAACGAAACCAACGTGGTGGAGCTGGACGCGATGGAACTCCTGGCGCAGCACCTCCACTTCTGCGAGGTGTGCGGGAAGGGCTTCACGCGCGACGCCAACCTTAGGATGCACATGCGAGCCCACGGGGACGAGTTCAAGACTGCGGACGCGCTCGCGAGCCGGGCGCGTGGGAAAACGACGCGGTTCTCGTGCCCCTTCGAAGGATGCAACCGCAACAAGACGCACAAGAAGTTCAGGCCGTTGAAGTCGGTGTTCTGTCTGAGGAACCACTTCAAGAGGAGCCACTGTCCCAAAACGCTGTCGTGCGAGCGCTGTCGGAAGAAGAGCTTCGCGGTGCTCTCGGACTTGAGGAGTCACATGAAGCAGTGTCGGGGAGAGGCCACGTGGAAGTGCTCGTGCGGAACCACGTTTTCGCGGAAGGACAAGCTGTTTGGACACGTGGCGCTGTTCGAGGGGCATTTGCCTATGCTTCAAGAGGAGAAGGAGACCTCGGCGGCGGCGGCGGTGGTAGCGGTGGTGGAAGGGTCGGTGAAGGAAAGTGACGGTGGTTTGGATGGGTTACCTGAAGGGTTCTTTGATGGGTTGGATGAATTCGGGTTTGGTTCCACTGAAAGCTCCTCTTCACCGGAAGAAACTTCGATTTTGGGTTTCCCACAAATAATTTAA 918 0.5621 MPNNINFNNDSLHVSLRNLSQLSTRMDSLQSFVSQSIQSHTLLTHHQMNIVSNEILTAIRHVITNGAALVAASENVLPFSETPNNETNVVELDAMELLAQHLHFCEVCGKGFTRDANLRMHMRAHGDEFKTADALASRARGKTTRFSCPFEGCNRNKTHKKFRPLKSVFCLRNHFKRSHCPKTLSCERCRKKSFAVLSDLRSHMKQCRGEATWKCSCGTTFSRKDKLFGHVALFEGHLPMLQEEKETSAAAAVVAVVEGSVKESDGGLDGLPEGFFDGLDEFGFGSTESSSSPEETSILGFPQII 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g01033 305 ProSiteProfiles Zinc finger C2H2 type domain profile. 103 130 IPR013087 -
Viun3g01033 305 Gene3D Classic Zinc Finger 138 235 - -
Viun3g01033 305 Gene3D Classic Zinc Finger 103 125 - -
Viun3g01033 305 SUPERFAMILY beta-beta-alpha zinc fingers 101 128 IPR036236 -
Viun3g01033 305 FunFam B-cell CLL/lymphoma 6, member B 102 125 - -
Viun3g01033 305 SMART c2h2final6 146 179 IPR013087 -
Viun3g01033 305 SMART c2h2final6 103 125 IPR013087 -
Viun3g01033 305 SMART c2h2final6 184 205 IPR013087 -
Viun3g01033 305 Pfam Zinc-finger of C2H2 type 104 123 - -
Viun3g01033 305 MobiDBLite consensus disorder prediction 285 305 - -
Viun3g01033 305 ProSitePatterns Zinc finger C2H2 type domain signature. 105 125 IPR013087 -
Viun3g01033 305 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 81 250 IPR044300 GO:0010044|GO:0010447
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g01033 Viun-Chr3 6387938 6389164 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g01033 83 259 C2H2 Transcription Factor Family AT1G34370 52.941 1.13e-69 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Viun3g01033 zf-met 0.0013 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g01033 - - vum:124823301 532.717